Strain Fitness in Variovorax sp. OAS795 around ABID97_RS08985

Experiment: D-Sorbitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS08980 and ABID97_RS08985 overlap by 4 nucleotidesABID97_RS08985 and ABID97_RS08990 overlap by 1 nucleotides ABID97_RS08980: ABID97_RS08980 - hypothetical protein, at 1,883,821 to 1,885,104 _RS08980 ABID97_RS08985: ABID97_RS08985 - DUF3304 domain-containing protein, at 1,885,101 to 1,885,676 _RS08985 ABID97_RS08990: ABID97_RS08990 - DUF2235 domain-containing protein, at 1,885,676 to 1,887,814 _RS08990 Position (kb) 1885 1886Strain fitness (log2 ratio) -1 0 1at 1884.306 kb on - strand, within ABID97_RS08980at 1884.572 kb on - strand, within ABID97_RS08980at 1884.593 kb on - strand, within ABID97_RS08980at 1884.594 kb on + strand, within ABID97_RS08980at 1884.595 kb on - strand, within ABID97_RS08980at 1884.648 kb on + strand, within ABID97_RS08980at 1884.815 kb on + strand, within ABID97_RS08980at 1884.816 kb on - strand, within ABID97_RS08980at 1885.303 kb on - strand, within ABID97_RS08985at 1885.303 kb on - strand, within ABID97_RS08985at 1885.338 kb on + strand, within ABID97_RS08985at 1885.356 kb on - strand, within ABID97_RS08985at 1885.468 kb on + strand, within ABID97_RS08985at 1885.469 kb on - strand, within ABID97_RS08985at 1885.533 kb on + strand, within ABID97_RS08985at 1885.605 kb on + strand, within ABID97_RS08985at 1885.606 kb on - strand, within ABID97_RS08985at 1885.606 kb on - strand, within ABID97_RS08985at 1885.644 kb on + strandat 1885.683 kb on + strandat 1885.684 kb on - strandat 1885.840 kb on + strandat 1885.840 kb on + strandat 1885.931 kb on + strand, within ABID97_RS08990at 1885.940 kb on + strand, within ABID97_RS08990at 1885.941 kb on - strand, within ABID97_RS08990at 1886.071 kb on + strand, within ABID97_RS08990at 1886.072 kb on - strand, within ABID97_RS08990at 1886.072 kb on - strand, within ABID97_RS08990at 1886.079 kb on + strand, within ABID97_RS08990at 1886.196 kb on - strand, within ABID97_RS08990at 1886.378 kb on - strand, within ABID97_RS08990at 1886.554 kb on - strand, within ABID97_RS08990at 1886.598 kb on - strand, within ABID97_RS08990

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol (C)
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1,884,306 - ABID97_RS08980 0.38 -0.0
1,884,572 - ABID97_RS08980 0.58 +0.3
1,884,593 - ABID97_RS08980 0.60 +0.7
1,884,594 + ABID97_RS08980 0.60 +0.9
1,884,595 - ABID97_RS08980 0.60 +0.1
1,884,648 + ABID97_RS08980 0.64 -0.1
1,884,815 + ABID97_RS08980 0.77 +0.2
1,884,816 - ABID97_RS08980 0.77 +0.7
1,885,303 - ABID97_RS08985 0.35 +0.3
1,885,303 - ABID97_RS08985 0.35 +0.1
1,885,338 + ABID97_RS08985 0.41 +1.4
1,885,356 - ABID97_RS08985 0.44 +1.5
1,885,468 + ABID97_RS08985 0.64 +0.0
1,885,469 - ABID97_RS08985 0.64 -0.7
1,885,533 + ABID97_RS08985 0.75 +1.2
1,885,605 + ABID97_RS08985 0.88 +0.1
1,885,606 - ABID97_RS08985 0.88 +0.8
1,885,606 - ABID97_RS08985 0.88 +0.3
1,885,644 + +0.5
1,885,683 + -0.7
1,885,684 - -1.1
1,885,840 + -0.1
1,885,840 + -0.7
1,885,931 + ABID97_RS08990 0.12 -0.6
1,885,940 + ABID97_RS08990 0.12 +0.8
1,885,941 - ABID97_RS08990 0.12 +0.4
1,886,071 + ABID97_RS08990 0.18 -0.2
1,886,072 - ABID97_RS08990 0.19 +0.3
1,886,072 - ABID97_RS08990 0.19 -0.3
1,886,079 + ABID97_RS08990 0.19 -1.6
1,886,196 - ABID97_RS08990 0.24 +0.0
1,886,378 - ABID97_RS08990 0.33 -0.1
1,886,554 - ABID97_RS08990 0.41 -0.5
1,886,598 - ABID97_RS08990 0.43 +0.1

Or see this region's nucleotide sequence