Strain Fitness in Variovorax sp. OAS795 around ABID97_RS08620

Experiment: D-Sorbitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS08615 and ABID97_RS08620 overlap by 4 nucleotidesABID97_RS08620 and ABID97_RS08625 are separated by 83 nucleotides ABID97_RS08615: ABID97_RS08615 - HAMP domain-containing sensor histidine kinase, at 1,808,806 to 1,810,161 _RS08615 ABID97_RS08620: ABID97_RS08620 - response regulator transcription factor, at 1,810,158 to 1,810,814 _RS08620 ABID97_RS08625: ABID97_RS08625 - S9 family peptidase, at 1,810,898 to 1,812,850 _RS08625 Position (kb) 1810 1811Strain fitness (log2 ratio) -1 0 1 2 3at 1809.776 kb on + strand, within ABID97_RS08615at 1809.778 kb on - strand, within ABID97_RS08615at 1809.830 kb on + strand, within ABID97_RS08615at 1809.831 kb on - strand, within ABID97_RS08615at 1809.831 kb on - strand, within ABID97_RS08615at 1809.864 kb on - strand, within ABID97_RS08615at 1810.025 kb on + strand, within ABID97_RS08615at 1810.026 kb on - strandat 1810.026 kb on - strandat 1810.043 kb on + strandat 1810.043 kb on + strandat 1810.049 kb on + strandat 1810.049 kb on + strandat 1810.050 kb on - strandat 1811.795 kb on + strand, within ABID97_RS08625at 1811.796 kb on - strand, within ABID97_RS08625at 1811.796 kb on - strand, within ABID97_RS08625

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol (C)
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1,809,776 + ABID97_RS08615 0.72 -0.5
1,809,778 - ABID97_RS08615 0.72 +0.4
1,809,830 + ABID97_RS08615 0.76 -0.0
1,809,831 - ABID97_RS08615 0.76 +0.1
1,809,831 - ABID97_RS08615 0.76 -1.4
1,809,864 - ABID97_RS08615 0.78 -0.3
1,810,025 + ABID97_RS08615 0.90 -0.3
1,810,026 - -0.4
1,810,026 - +0.4
1,810,043 + +0.0
1,810,043 + +2.9
1,810,049 + +0.4
1,810,049 + -0.3
1,810,050 - +0.7
1,811,795 + ABID97_RS08625 0.46 -0.1
1,811,796 - ABID97_RS08625 0.46 -0.2
1,811,796 - ABID97_RS08625 0.46 +1.4

Or see this region's nucleotide sequence