Strain Fitness in Variovorax sp. OAS795 around ABID97_RS07505

Experiment: D-Sorbitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS07500 and ABID97_RS07505 are separated by 15 nucleotidesABID97_RS07505 and ABID97_RS07510 are separated by 245 nucleotides ABID97_RS07500: ABID97_RS07500 - iron-sulfur cluster carrier protein ApbC, at 1,583,259 to 1,584,350 _RS07500 ABID97_RS07505: ABID97_RS07505 - LysR substrate-binding domain-containing protein, at 1,584,366 to 1,585,310 _RS07505 ABID97_RS07510: ABID97_RS07510 - NAD(P)H-dependent oxidoreductase subunit E, at 1,585,556 to 1,587,301 _RS07510 Position (kb) 1584 1585 1586Strain fitness (log2 ratio) -1 0 1at 1583.670 kb on + strand, within ABID97_RS07500at 1583.670 kb on + strand, within ABID97_RS07500at 1583.670 kb on + strand, within ABID97_RS07500at 1583.880 kb on + strand, within ABID97_RS07500at 1583.881 kb on - strand, within ABID97_RS07500at 1584.153 kb on + strand, within ABID97_RS07500at 1584.153 kb on + strand, within ABID97_RS07500at 1584.252 kb on + strandat 1584.252 kb on + strandat 1584.529 kb on - strand, within ABID97_RS07505at 1584.867 kb on + strand, within ABID97_RS07505at 1584.867 kb on + strand, within ABID97_RS07505at 1584.867 kb on + strand, within ABID97_RS07505at 1584.868 kb on - strand, within ABID97_RS07505at 1584.868 kb on - strand, within ABID97_RS07505at 1585.061 kb on + strand, within ABID97_RS07505at 1585.061 kb on + strand, within ABID97_RS07505at 1585.061 kb on + strand, within ABID97_RS07505at 1585.062 kb on - strand, within ABID97_RS07505at 1585.062 kb on - strand, within ABID97_RS07505at 1585.062 kb on - strand, within ABID97_RS07505at 1585.062 kb on - strand, within ABID97_RS07505at 1585.138 kb on - strand, within ABID97_RS07505at 1585.309 kb on - strandat 1585.343 kb on + strandat 1585.344 kb on - strandat 1585.347 kb on + strandat 1585.778 kb on + strand, within ABID97_RS07510at 1585.796 kb on + strand, within ABID97_RS07510at 1585.796 kb on + strand, within ABID97_RS07510at 1585.796 kb on + strand, within ABID97_RS07510at 1585.797 kb on - strand, within ABID97_RS07510at 1585.797 kb on - strand, within ABID97_RS07510at 1585.797 kb on - strand, within ABID97_RS07510at 1585.797 kb on - strand, within ABID97_RS07510at 1586.081 kb on + strand, within ABID97_RS07510at 1586.081 kb on + strand, within ABID97_RS07510at 1586.190 kb on - strand, within ABID97_RS07510

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol (C)
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1,583,670 + ABID97_RS07500 0.38 +0.1
1,583,670 + ABID97_RS07500 0.38 -1.1
1,583,670 + ABID97_RS07500 0.38 -0.7
1,583,880 + ABID97_RS07500 0.57 -1.4
1,583,881 - ABID97_RS07500 0.57 +0.9
1,584,153 + ABID97_RS07500 0.82 -1.1
1,584,153 + ABID97_RS07500 0.82 -1.6
1,584,252 + -1.3
1,584,252 + -1.7
1,584,529 - ABID97_RS07505 0.17 +0.0
1,584,867 + ABID97_RS07505 0.53 +0.5
1,584,867 + ABID97_RS07505 0.53 -0.2
1,584,867 + ABID97_RS07505 0.53 +0.2
1,584,868 - ABID97_RS07505 0.53 +0.3
1,584,868 - ABID97_RS07505 0.53 +0.3
1,585,061 + ABID97_RS07505 0.74 +0.0
1,585,061 + ABID97_RS07505 0.74 +0.8
1,585,061 + ABID97_RS07505 0.74 +0.7
1,585,062 - ABID97_RS07505 0.74 +0.0
1,585,062 - ABID97_RS07505 0.74 +0.5
1,585,062 - ABID97_RS07505 0.74 -0.3
1,585,062 - ABID97_RS07505 0.74 +0.3
1,585,138 - ABID97_RS07505 0.82 -0.4
1,585,309 - -1.3
1,585,343 + -0.1
1,585,344 - -0.3
1,585,347 + -0.1
1,585,778 + ABID97_RS07510 0.13 +0.0
1,585,796 + ABID97_RS07510 0.14 +0.4
1,585,796 + ABID97_RS07510 0.14 -0.2
1,585,796 + ABID97_RS07510 0.14 -0.0
1,585,797 - ABID97_RS07510 0.14 +0.1
1,585,797 - ABID97_RS07510 0.14 +0.1
1,585,797 - ABID97_RS07510 0.14 -1.7
1,585,797 - ABID97_RS07510 0.14 +0.4
1,586,081 + ABID97_RS07510 0.30 -0.2
1,586,081 + ABID97_RS07510 0.30 -0.0
1,586,190 - ABID97_RS07510 0.36 -0.1

Or see this region's nucleotide sequence