Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt glnL and glnA are separated by 285 nucleotides glnA and bipA are separated by 372 nucleotides
b3869: glnL - sensory histidine kinase in two-component regulatory system with GlnG (NCBI), at 4,053,313 to 4,054,362
glnL
b3870: glnA - glutamine synthetase (NCBI), at 4,054,648 to 4,056,057
glnA
b3871: bipA - GTP-binding protein (NCBI), at 4,056,430 to 4,058,253
bipA
Position (kb)
4054
4055
4056
4057 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4053.680 kb on - strand, within glnL at 4053.680 kb on - strand, within glnL at 4053.683 kb on - strand, within glnL at 4053.713 kb on - strand, within glnL at 4053.753 kb on + strand, within glnL at 4053.768 kb on - strand, within glnL at 4053.768 kb on - strand, within glnL at 4053.788 kb on - strand, within glnL at 4053.790 kb on + strand, within glnL at 4053.801 kb on + strand, within glnL at 4053.803 kb on - strand, within glnL at 4053.837 kb on + strand, within glnL at 4053.837 kb on + strand, within glnL at 4053.851 kb on - strand, within glnL at 4053.851 kb on - strand, within glnL at 4053.979 kb on + strand, within glnL at 4053.982 kb on + strand at 4053.988 kb on + strand, within glnL at 4054.065 kb on + strand, within glnL at 4054.079 kb on - strand, within glnL at 4054.124 kb on - strand, within glnL at 4054.170 kb on + strand, within glnL at 4054.299 kb on + strand at 4054.309 kb on + strand at 4054.367 kb on - strand at 4054.367 kb on - strand at 4054.476 kb on + strand at 4054.481 kb on - strand at 4054.481 kb on - strand at 4054.523 kb on + strand at 4054.523 kb on + strand at 4054.549 kb on - strand at 4054.568 kb on - strand at 4054.576 kb on + strand at 4054.616 kb on - strand at 4054.616 kb on - strand at 4054.616 kb on - strand at 4054.655 kb on + strand at 4054.657 kb on + strand at 4054.663 kb on - strand at 4054.725 kb on - strand at 4054.914 kb on + strand, within glnA at 4054.950 kb on + strand, within glnA at 4055.087 kb on + strand, within glnA at 4055.096 kb on + strand, within glnA at 4055.186 kb on - strand, within glnA at 4055.214 kb on + strand, within glnA at 4055.222 kb on - strand, within glnA at 4055.262 kb on - strand, within glnA at 4055.331 kb on - strand, within glnA at 4055.383 kb on - strand, within glnA at 4055.398 kb on + strand, within glnA at 4055.406 kb on - strand, within glnA at 4055.411 kb on - strand, within glnA at 4055.420 kb on - strand, within glnA at 4055.672 kb on + strand, within glnA at 4055.680 kb on - strand at 4055.760 kb on - strand, within glnA at 4055.766 kb on + strand, within glnA at 4055.837 kb on + strand, within glnA at 4055.842 kb on + strand, within glnA at 4055.872 kb on + strand, within glnA at 4055.880 kb on - strand at 4055.880 kb on - strand at 4056.067 kb on + strand at 4056.075 kb on - strand at 4056.204 kb on - strand at 4056.258 kb on + strand at 4056.334 kb on + strand at 4056.397 kb on - strand at 4056.414 kb on - strand at 4056.414 kb on - strand at 4056.468 kb on + strand at 4056.483 kb on + strand at 4056.483 kb on + strand at 4056.541 kb on + strand at 4056.541 kb on + strand at 4056.655 kb on - strand, within bipA at 4056.738 kb on - strand, within bipA at 4056.781 kb on + strand, within bipA at 4056.824 kb on + strand, within bipA at 4056.855 kb on - strand, within bipA at 4056.878 kb on + strand, within bipA at 4056.923 kb on + strand, within bipA at 4056.936 kb on - strand, within bipA at 4056.954 kb on - strand, within bipA at 4056.954 kb on - strand, within bipA at 4056.979 kb on + strand, within bipA at 4056.979 kb on + strand, within bipA at 4056.980 kb on - strand, within bipA at 4056.980 kb on - strand, within bipA at 4056.990 kb on - strand, within bipA
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 4,053,680 - glnL b3869 0.35 -1.1 4,053,680 - glnL b3869 0.35 -0.9 4,053,683 - glnL b3869 0.35 -1.1 4,053,713 - glnL b3869 0.38 -0.8 4,053,753 + glnL b3869 0.42 +0.3 4,053,768 - glnL b3869 0.43 -0.5 4,053,768 - glnL b3869 0.43 -0.3 4,053,788 - glnL b3869 0.45 -1.1 4,053,790 + glnL b3869 0.45 -0.4 4,053,801 + glnL b3869 0.46 +0.3 4,053,803 - glnL b3869 0.47 -0.3 4,053,837 + glnL b3869 0.50 -1.0 4,053,837 + glnL b3869 0.50 -0.1 4,053,851 - glnL b3869 0.51 -0.5 4,053,851 - glnL b3869 0.51 -1.2 4,053,979 + glnL b3869 0.63 +0.4 4,053,982 + +0.9 4,053,988 + glnL b3869 0.64 -0.3 4,054,065 + glnL b3869 0.72 -0.0 4,054,079 - glnL b3869 0.73 -2.1 4,054,124 - glnL b3869 0.77 -1.9 4,054,170 + glnL b3869 0.82 +1.4 4,054,299 + -0.9 4,054,309 + -0.7 4,054,367 - +0.3 4,054,367 - +0.4 4,054,476 + +1.0 4,054,481 - -0.6 4,054,481 - -0.1 4,054,523 + -0.2 4,054,523 + -0.7 4,054,549 - -0.8 4,054,568 - +0.4 4,054,576 + +0.5 4,054,616 - -0.6 4,054,616 - +0.2 4,054,616 - -0.4 4,054,655 + +0.9 4,054,657 + -1.6 4,054,663 - +0.9 4,054,725 - -0.5 4,054,914 + glnA b3870 0.19 -0.7 4,054,950 + glnA b3870 0.21 -1.1 4,055,087 + glnA b3870 0.31 -1.1 4,055,096 + glnA b3870 0.32 +0.3 4,055,186 - glnA b3870 0.38 -2.0 4,055,214 + glnA b3870 0.40 +0.5 4,055,222 - glnA b3870 0.41 +0.3 4,055,262 - glnA b3870 0.44 -1.1 4,055,331 - glnA b3870 0.48 -1.1 4,055,383 - glnA b3870 0.52 -1.3 4,055,398 + glnA b3870 0.53 -0.5 4,055,406 - glnA b3870 0.54 +1.9 4,055,411 - glnA b3870 0.54 +1.9 4,055,420 - glnA b3870 0.55 -0.1 4,055,672 + glnA b3870 0.73 -0.5 4,055,680 - +1.9 4,055,760 - glnA b3870 0.79 -0.1 4,055,766 + glnA b3870 0.79 +0.9 4,055,837 + glnA b3870 0.84 -0.9 4,055,842 + glnA b3870 0.85 -0.9 4,055,872 + glnA b3870 0.87 -1.3 4,055,880 - +0.3 4,055,880 - -0.1 4,056,067 + -1.5 4,056,075 - -1.2 4,056,204 - +0.6 4,056,258 + -0.2 4,056,334 + +1.0 4,056,397 - -0.2 4,056,414 - +0.0 4,056,414 - +0.3 4,056,468 + -0.0 4,056,483 + -0.4 4,056,483 + -0.0 4,056,541 + +0.4 4,056,541 + -0.1 4,056,655 - bipA b3871 0.12 -0.3 4,056,738 - bipA b3871 0.17 +0.7 4,056,781 + bipA b3871 0.19 +0.6 4,056,824 + bipA b3871 0.22 -0.7 4,056,855 - bipA b3871 0.23 +0.9 4,056,878 + bipA b3871 0.25 -0.5 4,056,923 + bipA b3871 0.27 +0.1 4,056,936 - bipA b3871 0.28 -0.4 4,056,954 - bipA b3871 0.29 -0.8 4,056,954 - bipA b3871 0.29 -0.8 4,056,979 + bipA b3871 0.30 -0.4 4,056,979 + bipA b3871 0.30 -0.1 4,056,980 - bipA b3871 0.30 -1.4 4,056,980 - bipA b3871 0.30 -0.7 4,056,990 - bipA b3871 0.31 +1.4
Or see this region's nucleotide sequence