Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4517

Experiment: m.b. perchlorate 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_4516 and Echvi_4517 are separated by 5 nucleotidesEchvi_4517 and Echvi_4518 are separated by 11 nucleotides Echvi_4516: Echvi_4516 - Dihydrodipicolinate synthase/N-acetylneuraminate lyase, at 5,394,685 to 5,395,614 _4516 Echvi_4517: Echvi_4517 - Periplasmic component of the Tol biopolymer transport system, at 5,395,620 to 5,397,107 _4517 Echvi_4518: Echvi_4518 - hypothetical protein, at 5,397,119 to 5,399,086 _4518 Position (kb) 5395 5396 5397 5398Strain fitness (log2 ratio) -2 -1 0 1 2at 5394.621 kb on + strandat 5394.621 kb on + strandat 5394.621 kb on + strandat 5394.622 kb on - strandat 5394.707 kb on - strandat 5394.712 kb on - strandat 5394.823 kb on + strand, within Echvi_4516at 5394.839 kb on + strand, within Echvi_4516at 5394.839 kb on + strand, within Echvi_4516at 5394.933 kb on - strand, within Echvi_4516at 5394.944 kb on + strand, within Echvi_4516at 5394.944 kb on + strand, within Echvi_4516at 5394.986 kb on + strand, within Echvi_4516at 5394.998 kb on - strand, within Echvi_4516at 5395.064 kb on + strand, within Echvi_4516at 5395.073 kb on - strand, within Echvi_4516at 5395.111 kb on - strand, within Echvi_4516at 5395.176 kb on + strand, within Echvi_4516at 5395.177 kb on - strand, within Echvi_4516at 5395.188 kb on + strand, within Echvi_4516at 5395.189 kb on - strand, within Echvi_4516at 5395.189 kb on - strand, within Echvi_4516at 5395.193 kb on + strand, within Echvi_4516at 5395.193 kb on + strand, within Echvi_4516at 5395.215 kb on + strand, within Echvi_4516at 5395.216 kb on - strand, within Echvi_4516at 5395.216 kb on - strand, within Echvi_4516at 5395.218 kb on + strand, within Echvi_4516at 5395.218 kb on + strand, within Echvi_4516at 5395.218 kb on + strand, within Echvi_4516at 5395.219 kb on - strand, within Echvi_4516at 5395.219 kb on - strand, within Echvi_4516at 5395.270 kb on - strand, within Echvi_4516at 5395.270 kb on - strand, within Echvi_4516at 5395.270 kb on - strand, within Echvi_4516at 5395.271 kb on + strand, within Echvi_4516at 5395.271 kb on + strand, within Echvi_4516at 5395.271 kb on + strand, within Echvi_4516at 5395.271 kb on + strand, within Echvi_4516at 5395.271 kb on + strand, within Echvi_4516at 5395.271 kb on + strand, within Echvi_4516at 5395.272 kb on - strand, within Echvi_4516at 5395.272 kb on - strand, within Echvi_4516at 5395.272 kb on - strand, within Echvi_4516at 5395.275 kb on - strand, within Echvi_4516at 5395.298 kb on + strand, within Echvi_4516at 5395.298 kb on + strand, within Echvi_4516at 5395.298 kb on + strand, within Echvi_4516at 5395.298 kb on + strand, within Echvi_4516at 5395.299 kb on - strand, within Echvi_4516at 5395.299 kb on - strand, within Echvi_4516at 5395.335 kb on + strand, within Echvi_4516at 5395.335 kb on + strand, within Echvi_4516at 5395.335 kb on + strand, within Echvi_4516at 5395.336 kb on - strand, within Echvi_4516at 5395.336 kb on - strand, within Echvi_4516at 5395.367 kb on - strand, within Echvi_4516at 5395.411 kb on + strand, within Echvi_4516at 5395.413 kb on + strand, within Echvi_4516at 5395.413 kb on + strand, within Echvi_4516at 5395.414 kb on - strand, within Echvi_4516at 5395.414 kb on - strand, within Echvi_4516at 5395.432 kb on + strand, within Echvi_4516at 5395.432 kb on + strand, within Echvi_4516at 5395.531 kb on - strandat 5395.554 kb on + strandat 5395.554 kb on + strandat 5395.555 kb on - strandat 5395.555 kb on - strandat 5395.714 kb on + strandat 5395.733 kb on + strandat 5395.733 kb on + strandat 5395.733 kb on + strandat 5395.733 kb on + strandat 5395.734 kb on - strandat 5395.784 kb on + strand, within Echvi_4517at 5395.784 kb on + strand, within Echvi_4517at 5395.846 kb on + strand, within Echvi_4517at 5395.859 kb on + strand, within Echvi_4517at 5395.859 kb on + strand, within Echvi_4517at 5395.932 kb on + strand, within Echvi_4517at 5395.933 kb on - strand, within Echvi_4517at 5395.937 kb on + strand, within Echvi_4517at 5395.939 kb on + strand, within Echvi_4517at 5396.154 kb on + strand, within Echvi_4517at 5396.170 kb on - strand, within Echvi_4517at 5396.201 kb on + strand, within Echvi_4517at 5396.215 kb on + strand, within Echvi_4517at 5396.228 kb on - strand, within Echvi_4517at 5396.232 kb on - strand, within Echvi_4517at 5396.299 kb on - strand, within Echvi_4517at 5396.394 kb on + strand, within Echvi_4517at 5396.394 kb on + strand, within Echvi_4517at 5396.396 kb on + strand, within Echvi_4517at 5396.396 kb on + strand, within Echvi_4517at 5396.397 kb on - strand, within Echvi_4517at 5396.436 kb on - strand, within Echvi_4517at 5396.436 kb on - strand, within Echvi_4517at 5396.436 kb on - strand, within Echvi_4517at 5396.445 kb on + strand, within Echvi_4517at 5396.445 kb on + strand, within Echvi_4517at 5396.489 kb on + strand, within Echvi_4517at 5396.490 kb on - strand, within Echvi_4517at 5396.490 kb on - strand, within Echvi_4517at 5396.490 kb on - strand, within Echvi_4517at 5396.490 kb on - strand, within Echvi_4517at 5396.491 kb on + strand, within Echvi_4517at 5396.495 kb on + strand, within Echvi_4517at 5396.565 kb on - strand, within Echvi_4517at 5396.720 kb on + strand, within Echvi_4517at 5396.728 kb on + strand, within Echvi_4517at 5396.729 kb on - strand, within Echvi_4517at 5396.790 kb on + strand, within Echvi_4517at 5396.791 kb on - strand, within Echvi_4517at 5396.871 kb on + strand, within Echvi_4517at 5396.872 kb on - strand, within Echvi_4517at 5396.937 kb on + strand, within Echvi_4517at 5396.938 kb on - strand, within Echvi_4517at 5396.959 kb on - strandat 5396.965 kb on - strandat 5396.984 kb on + strandat 5397.014 kb on + strandat 5397.014 kb on + strandat 5397.015 kb on - strandat 5397.015 kb on - strandat 5397.015 kb on - strandat 5397.015 kb on - strandat 5397.015 kb on - strandat 5397.015 kb on - strandat 5397.015 kb on - strandat 5397.053 kb on + strandat 5397.060 kb on - strandat 5397.120 kb on + strandat 5397.120 kb on + strandat 5397.130 kb on + strandat 5397.256 kb on + strandat 5397.308 kb on + strandat 5397.324 kb on - strand, within Echvi_4518at 5397.324 kb on - strand, within Echvi_4518at 5397.429 kb on - strand, within Echvi_4518at 5397.443 kb on - strand, within Echvi_4518at 5397.452 kb on + strand, within Echvi_4518at 5397.453 kb on - strand, within Echvi_4518at 5397.471 kb on + strand, within Echvi_4518at 5397.477 kb on - strand, within Echvi_4518at 5397.482 kb on - strand, within Echvi_4518at 5397.526 kb on + strand, within Echvi_4518at 5397.527 kb on - strand, within Echvi_4518at 5397.527 kb on - strand, within Echvi_4518at 5397.528 kb on + strand, within Echvi_4518at 5397.530 kb on + strand, within Echvi_4518at 5397.530 kb on + strand, within Echvi_4518at 5397.530 kb on + strand, within Echvi_4518at 5397.530 kb on + strand, within Echvi_4518at 5397.530 kb on + strand, within Echvi_4518at 5397.531 kb on - strand, within Echvi_4518at 5397.531 kb on - strand, within Echvi_4518at 5397.531 kb on - strand, within Echvi_4518at 5397.571 kb on + strand, within Echvi_4518at 5397.571 kb on + strand, within Echvi_4518at 5397.572 kb on - strand, within Echvi_4518at 5397.572 kb on - strand, within Echvi_4518at 5397.607 kb on + strand, within Echvi_4518at 5397.607 kb on + strand, within Echvi_4518at 5397.697 kb on + strand, within Echvi_4518at 5397.768 kb on - strand, within Echvi_4518at 5397.778 kb on + strand, within Echvi_4518at 5397.817 kb on + strand, within Echvi_4518at 5397.817 kb on + strand, within Echvi_4518at 5397.817 kb on + strand, within Echvi_4518at 5397.817 kb on + strand, within Echvi_4518at 5397.817 kb on + strand, within Echvi_4518at 5397.818 kb on - strand, within Echvi_4518at 5397.818 kb on - strand, within Echvi_4518at 5397.820 kb on - strand, within Echvi_4518at 5397.922 kb on + strand, within Echvi_4518at 5397.922 kb on + strand, within Echvi_4518at 5397.923 kb on - strand, within Echvi_4518at 5397.926 kb on + strand, within Echvi_4518at 5397.927 kb on - strand, within Echvi_4518at 5397.935 kb on - strandat 5397.962 kb on - strand, within Echvi_4518at 5397.962 kb on - strand, within Echvi_4518at 5397.977 kb on - strand, within Echvi_4518at 5397.986 kb on - strand, within Echvi_4518at 5397.988 kb on + strand, within Echvi_4518at 5397.988 kb on + strand, within Echvi_4518at 5397.989 kb on - strand, within Echvi_4518at 5397.989 kb on - strand, within Echvi_4518

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 75 mM
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5,394,621 + -0.0
5,394,621 + +1.4
5,394,621 + +0.3
5,394,622 - -0.1
5,394,707 - -2.6
5,394,712 - -0.8
5,394,823 + Echvi_4516 0.15 -0.4
5,394,839 + Echvi_4516 0.17 +0.4
5,394,839 + Echvi_4516 0.17 -0.1
5,394,933 - Echvi_4516 0.27 -1.0
5,394,944 + Echvi_4516 0.28 -0.1
5,394,944 + Echvi_4516 0.28 -0.2
5,394,986 + Echvi_4516 0.32 -0.4
5,394,998 - Echvi_4516 0.34 -0.5
5,395,064 + Echvi_4516 0.41 -0.8
5,395,073 - Echvi_4516 0.42 +0.0
5,395,111 - Echvi_4516 0.46 -0.1
5,395,176 + Echvi_4516 0.53 +0.4
5,395,177 - Echvi_4516 0.53 +0.4
5,395,188 + Echvi_4516 0.54 +0.6
5,395,189 - Echvi_4516 0.54 -0.9
5,395,189 - Echvi_4516 0.54 -1.0
5,395,193 + Echvi_4516 0.55 -0.4
5,395,193 + Echvi_4516 0.55 +0.4
5,395,215 + Echvi_4516 0.57 -0.5
5,395,216 - Echvi_4516 0.57 -0.7
5,395,216 - Echvi_4516 0.57 -0.7
5,395,218 + Echvi_4516 0.57 +0.9
5,395,218 + Echvi_4516 0.57 -1.4
5,395,218 + Echvi_4516 0.57 +1.1
5,395,219 - Echvi_4516 0.57 -1.3
5,395,219 - Echvi_4516 0.57 +0.1
5,395,270 - Echvi_4516 0.63 +0.2
5,395,270 - Echvi_4516 0.63 +0.0
5,395,270 - Echvi_4516 0.63 -0.9
5,395,271 + Echvi_4516 0.63 +1.7
5,395,271 + Echvi_4516 0.63 +0.6
5,395,271 + Echvi_4516 0.63 -0.3
5,395,271 + Echvi_4516 0.63 -0.1
5,395,271 + Echvi_4516 0.63 -0.2
5,395,271 + Echvi_4516 0.63 +0.7
5,395,272 - Echvi_4516 0.63 -0.7
5,395,272 - Echvi_4516 0.63 +1.1
5,395,272 - Echvi_4516 0.63 +0.9
5,395,275 - Echvi_4516 0.63 +0.0
5,395,298 + Echvi_4516 0.66 -0.1
5,395,298 + Echvi_4516 0.66 -0.5
5,395,298 + Echvi_4516 0.66 -1.1
5,395,298 + Echvi_4516 0.66 -0.2
5,395,299 - Echvi_4516 0.66 -0.4
5,395,299 - Echvi_4516 0.66 +1.7
5,395,335 + Echvi_4516 0.70 -0.6
5,395,335 + Echvi_4516 0.70 +1.5
5,395,335 + Echvi_4516 0.70 +0.2
5,395,336 - Echvi_4516 0.70 +0.3
5,395,336 - Echvi_4516 0.70 +0.0
5,395,367 - Echvi_4516 0.73 +1.1
5,395,411 + Echvi_4516 0.78 +0.3
5,395,413 + Echvi_4516 0.78 -0.4
5,395,413 + Echvi_4516 0.78 -0.7
5,395,414 - Echvi_4516 0.78 -0.2
5,395,414 - Echvi_4516 0.78 +1.5
5,395,432 + Echvi_4516 0.80 +0.6
5,395,432 + Echvi_4516 0.80 +1.3
5,395,531 - -1.1
5,395,554 + +0.3
5,395,554 + -1.0
5,395,555 - +0.7
5,395,555 - +0.7
5,395,714 + +1.3
5,395,733 + +0.0
5,395,733 + -0.1
5,395,733 + -0.5
5,395,733 + -0.4
5,395,734 - +0.9
5,395,784 + Echvi_4517 0.11 +0.6
5,395,784 + Echvi_4517 0.11 +0.4
5,395,846 + Echvi_4517 0.15 -1.4
5,395,859 + Echvi_4517 0.16 +0.3
5,395,859 + Echvi_4517 0.16 +0.9
5,395,932 + Echvi_4517 0.21 -1.1
5,395,933 - Echvi_4517 0.21 -0.3
5,395,937 + Echvi_4517 0.21 +0.3
5,395,939 + Echvi_4517 0.21 +0.0
5,396,154 + Echvi_4517 0.36 -0.1
5,396,170 - Echvi_4517 0.37 -1.4
5,396,201 + Echvi_4517 0.39 -1.2
5,396,215 + Echvi_4517 0.40 +0.1
5,396,228 - Echvi_4517 0.41 +0.4
5,396,232 - Echvi_4517 0.41 -0.4
5,396,299 - Echvi_4517 0.46 -1.6
5,396,394 + Echvi_4517 0.52 +0.3
5,396,394 + Echvi_4517 0.52 +0.1
5,396,396 + Echvi_4517 0.52 -0.4
5,396,396 + Echvi_4517 0.52 +0.4
5,396,397 - Echvi_4517 0.52 +0.6
5,396,436 - Echvi_4517 0.55 -0.9
5,396,436 - Echvi_4517 0.55 -1.0
5,396,436 - Echvi_4517 0.55 +0.1
5,396,445 + Echvi_4517 0.55 -0.7
5,396,445 + Echvi_4517 0.55 +0.4
5,396,489 + Echvi_4517 0.58 +0.9
5,396,490 - Echvi_4517 0.58 +0.4
5,396,490 - Echvi_4517 0.58 +0.3
5,396,490 - Echvi_4517 0.58 -0.1
5,396,490 - Echvi_4517 0.58 +0.1
5,396,491 + Echvi_4517 0.59 +0.6
5,396,495 + Echvi_4517 0.59 -0.0
5,396,565 - Echvi_4517 0.64 +0.2
5,396,720 + Echvi_4517 0.74 +0.4
5,396,728 + Echvi_4517 0.74 +1.1
5,396,729 - Echvi_4517 0.75 +1.0
5,396,790 + Echvi_4517 0.79 -0.7
5,396,791 - Echvi_4517 0.79 +0.4
5,396,871 + Echvi_4517 0.84 -1.3
5,396,872 - Echvi_4517 0.84 -0.2
5,396,937 + Echvi_4517 0.89 -0.3
5,396,938 - Echvi_4517 0.89 +0.6
5,396,959 - +0.5
5,396,965 - -2.4
5,396,984 + +0.2
5,397,014 + -0.5
5,397,014 + -0.6
5,397,015 - -0.0
5,397,015 - +0.9
5,397,015 - +1.2
5,397,015 - +0.1
5,397,015 - +1.0
5,397,015 - -0.8
5,397,015 - +0.3
5,397,053 + -0.9
5,397,060 - -0.0
5,397,120 + -0.1
5,397,120 + +0.1
5,397,130 + +0.4
5,397,256 + +1.0
5,397,308 + +1.1
5,397,324 - Echvi_4518 0.10 +1.0
5,397,324 - Echvi_4518 0.10 +0.3
5,397,429 - Echvi_4518 0.16 +1.3
5,397,443 - Echvi_4518 0.16 +1.1
5,397,452 + Echvi_4518 0.17 -0.1
5,397,453 - Echvi_4518 0.17 +2.3
5,397,471 + Echvi_4518 0.18 -0.3
5,397,477 - Echvi_4518 0.18 -0.6
5,397,482 - Echvi_4518 0.18 -0.0
5,397,526 + Echvi_4518 0.21 +0.2
5,397,527 - Echvi_4518 0.21 -0.7
5,397,527 - Echvi_4518 0.21 -2.1
5,397,528 + Echvi_4518 0.21 -0.2
5,397,530 + Echvi_4518 0.21 -0.1
5,397,530 + Echvi_4518 0.21 -0.4
5,397,530 + Echvi_4518 0.21 +1.2
5,397,530 + Echvi_4518 0.21 -0.6
5,397,530 + Echvi_4518 0.21 +1.1
5,397,531 - Echvi_4518 0.21 +0.7
5,397,531 - Echvi_4518 0.21 -0.7
5,397,531 - Echvi_4518 0.21 +0.6
5,397,571 + Echvi_4518 0.23 +0.4
5,397,571 + Echvi_4518 0.23 +0.2
5,397,572 - Echvi_4518 0.23 +0.6
5,397,572 - Echvi_4518 0.23 +0.6
5,397,607 + Echvi_4518 0.25 -1.1
5,397,607 + Echvi_4518 0.25 -0.7
5,397,697 + Echvi_4518 0.29 +1.1
5,397,768 - Echvi_4518 0.33 -0.4
5,397,778 + Echvi_4518 0.33 +0.5
5,397,817 + Echvi_4518 0.35 -0.4
5,397,817 + Echvi_4518 0.35 -0.8
5,397,817 + Echvi_4518 0.35 -0.4
5,397,817 + Echvi_4518 0.35 -0.7
5,397,817 + Echvi_4518 0.35 +0.2
5,397,818 - Echvi_4518 0.36 +0.4
5,397,818 - Echvi_4518 0.36 +1.1
5,397,820 - Echvi_4518 0.36 -1.1
5,397,922 + Echvi_4518 0.41 -0.3
5,397,922 + Echvi_4518 0.41 -0.4
5,397,923 - Echvi_4518 0.41 -0.4
5,397,926 + Echvi_4518 0.41 -0.1
5,397,927 - Echvi_4518 0.41 +0.3
5,397,935 - -0.7
5,397,962 - Echvi_4518 0.43 +0.8
5,397,962 - Echvi_4518 0.43 -0.8
5,397,977 - Echvi_4518 0.44 -1.6
5,397,986 - Echvi_4518 0.44 +0.1
5,397,988 + Echvi_4518 0.44 +0.6
5,397,988 + Echvi_4518 0.44 +0.2
5,397,989 - Echvi_4518 0.44 +0.2
5,397,989 - Echvi_4518 0.44 +0.6

Or see this region's nucleotide sequence