Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_3611

Experiment: m.b. perchlorate 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_3610 and Echvi_3611 are separated by 23 nucleotidesEchvi_3611 and Echvi_3612 are separated by 311 nucleotides Echvi_3610: Echvi_3610 - hypothetical protein, at 4,283,182 to 4,284,717 _3610 Echvi_3611: Echvi_3611 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 4,284,741 to 4,285,100 _3611 Echvi_3612: Echvi_3612 - Imidazolonepropionase and related amidohydrolases, at 4,285,412 to 4,287,064 _3612 Position (kb) 4284 4285 4286Strain fitness (log2 ratio) -2 -1 0 1 2at 4283.780 kb on - strand, within Echvi_3610at 4283.804 kb on - strand, within Echvi_3610at 4283.804 kb on - strand, within Echvi_3610at 4283.804 kb on - strand, within Echvi_3610at 4283.809 kb on - strand, within Echvi_3610at 4283.816 kb on + strand, within Echvi_3610at 4283.817 kb on - strand, within Echvi_3610at 4283.830 kb on - strand, within Echvi_3610at 4283.833 kb on + strand, within Echvi_3610at 4283.833 kb on + strand, within Echvi_3610at 4283.833 kb on + strand, within Echvi_3610at 4283.834 kb on - strand, within Echvi_3610at 4283.834 kb on - strand, within Echvi_3610at 4283.834 kb on - strand, within Echvi_3610at 4283.834 kb on - strand, within Echvi_3610at 4283.834 kb on - strand, within Echvi_3610at 4283.956 kb on - strand, within Echvi_3610at 4283.979 kb on + strand, within Echvi_3610at 4283.979 kb on + strand, within Echvi_3610at 4284.001 kb on + strand, within Echvi_3610at 4284.001 kb on + strand, within Echvi_3610at 4284.001 kb on + strand, within Echvi_3610at 4284.002 kb on - strand, within Echvi_3610at 4284.002 kb on - strand, within Echvi_3610at 4284.002 kb on - strand, within Echvi_3610at 4284.042 kb on + strand, within Echvi_3610at 4284.043 kb on - strand, within Echvi_3610at 4284.043 kb on - strand, within Echvi_3610at 4284.079 kb on + strand, within Echvi_3610at 4284.080 kb on - strand, within Echvi_3610at 4284.080 kb on - strand, within Echvi_3610at 4284.096 kb on - strand, within Echvi_3610at 4284.096 kb on - strand, within Echvi_3610at 4284.096 kb on - strand, within Echvi_3610at 4284.111 kb on + strand, within Echvi_3610at 4284.140 kb on + strand, within Echvi_3610at 4284.140 kb on + strand, within Echvi_3610at 4284.150 kb on + strand, within Echvi_3610at 4284.150 kb on + strand, within Echvi_3610at 4284.181 kb on - strand, within Echvi_3610at 4284.181 kb on - strand, within Echvi_3610at 4284.185 kb on + strand, within Echvi_3610at 4284.222 kb on + strand, within Echvi_3610at 4284.244 kb on + strand, within Echvi_3610at 4284.271 kb on + strand, within Echvi_3610at 4284.282 kb on + strand, within Echvi_3610at 4284.375 kb on - strand, within Echvi_3610at 4284.375 kb on - strand, within Echvi_3610at 4284.384 kb on + strand, within Echvi_3610at 4284.391 kb on + strand, within Echvi_3610at 4284.391 kb on + strand, within Echvi_3610at 4284.392 kb on - strand, within Echvi_3610at 4284.392 kb on - strand, within Echvi_3610at 4284.402 kb on + strand, within Echvi_3610at 4284.402 kb on + strand, within Echvi_3610at 4284.402 kb on + strand, within Echvi_3610at 4284.402 kb on + strand, within Echvi_3610at 4284.403 kb on - strand, within Echvi_3610at 4284.403 kb on - strand, within Echvi_3610at 4284.403 kb on - strand, within Echvi_3610at 4284.404 kb on + strand, within Echvi_3610at 4284.405 kb on - strand, within Echvi_3610at 4284.405 kb on - strand, within Echvi_3610at 4284.405 kb on - strand, within Echvi_3610at 4284.412 kb on + strand, within Echvi_3610at 4284.413 kb on - strand, within Echvi_3610at 4284.420 kb on + strand, within Echvi_3610at 4284.446 kb on + strand, within Echvi_3610at 4284.446 kb on + strand, within Echvi_3610at 4284.447 kb on - strand, within Echvi_3610at 4284.449 kb on + strand, within Echvi_3610at 4284.449 kb on + strand, within Echvi_3610at 4284.450 kb on - strand, within Echvi_3610at 4284.470 kb on - strand, within Echvi_3610at 4284.470 kb on - strand, within Echvi_3610at 4284.481 kb on - strand, within Echvi_3610at 4284.571 kb on + strandat 4284.571 kb on + strandat 4284.572 kb on - strandat 4284.572 kb on - strandat 4284.572 kb on - strandat 4284.618 kb on + strandat 4284.621 kb on + strandat 4284.622 kb on - strandat 4284.622 kb on - strandat 4284.686 kb on - strandat 4284.687 kb on + strandat 4284.736 kb on - strandat 4284.766 kb on - strandat 4284.771 kb on + strandat 4284.821 kb on + strand, within Echvi_3611at 4284.890 kb on - strand, within Echvi_3611at 4284.904 kb on + strand, within Echvi_3611at 4284.930 kb on - strand, within Echvi_3611at 4284.941 kb on + strand, within Echvi_3611at 4284.951 kb on + strand, within Echvi_3611at 4285.011 kb on + strand, within Echvi_3611at 4285.011 kb on + strand, within Echvi_3611at 4285.017 kb on + strand, within Echvi_3611at 4285.017 kb on + strand, within Echvi_3611at 4285.018 kb on - strand, within Echvi_3611at 4285.018 kb on - strand, within Echvi_3611at 4285.022 kb on + strand, within Echvi_3611at 4285.023 kb on - strand, within Echvi_3611at 4285.081 kb on - strandat 4285.087 kb on - strandat 4285.136 kb on - strandat 4285.157 kb on + strandat 4285.162 kb on - strandat 4285.163 kb on + strandat 4285.164 kb on - strandat 4285.179 kb on - strandat 4285.183 kb on - strandat 4285.185 kb on - strandat 4285.185 kb on - strandat 4285.290 kb on + strandat 4285.290 kb on + strandat 4285.293 kb on + strandat 4285.372 kb on + strandat 4285.372 kb on + strandat 4285.373 kb on - strandat 4285.387 kb on + strandat 4285.387 kb on + strandat 4285.387 kb on + strandat 4285.387 kb on + strandat 4285.388 kb on - strandat 4285.394 kb on - strandat 4285.416 kb on + strandat 4285.417 kb on - strandat 4285.417 kb on - strandat 4285.502 kb on + strandat 4285.502 kb on + strandat 4285.503 kb on - strandat 4285.503 kb on - strandat 4285.561 kb on + strandat 4285.655 kb on + strand, within Echvi_3612at 4285.674 kb on + strand, within Echvi_3612at 4285.727 kb on + strand, within Echvi_3612at 4285.727 kb on + strand, within Echvi_3612at 4285.791 kb on - strand, within Echvi_3612at 4285.811 kb on - strand, within Echvi_3612at 4285.840 kb on + strand, within Echvi_3612at 4285.841 kb on - strand, within Echvi_3612at 4285.900 kb on - strand, within Echvi_3612at 4285.926 kb on + strand, within Echvi_3612at 4285.926 kb on + strand, within Echvi_3612at 4285.926 kb on + strand, within Echvi_3612at 4285.927 kb on - strand, within Echvi_3612at 4285.947 kb on + strand, within Echvi_3612at 4285.948 kb on - strand, within Echvi_3612at 4286.013 kb on - strand, within Echvi_3612at 4286.022 kb on + strand, within Echvi_3612at 4286.022 kb on + strand, within Echvi_3612at 4286.023 kb on - strand, within Echvi_3612at 4286.025 kb on - strand, within Echvi_3612at 4286.027 kb on - strand, within Echvi_3612at 4286.078 kb on - strand, within Echvi_3612

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 75 mM
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4,283,780 - Echvi_3610 0.39 +0.9
4,283,804 - Echvi_3610 0.40 -0.7
4,283,804 - Echvi_3610 0.40 -0.5
4,283,804 - Echvi_3610 0.40 -0.1
4,283,809 - Echvi_3610 0.41 -0.2
4,283,816 + Echvi_3610 0.41 -0.1
4,283,817 - Echvi_3610 0.41 -0.0
4,283,830 - Echvi_3610 0.42 -0.7
4,283,833 + Echvi_3610 0.42 +0.2
4,283,833 + Echvi_3610 0.42 +1.5
4,283,833 + Echvi_3610 0.42 +0.1
4,283,834 - Echvi_3610 0.42 +0.6
4,283,834 - Echvi_3610 0.42 -0.1
4,283,834 - Echvi_3610 0.42 -1.1
4,283,834 - Echvi_3610 0.42 -0.3
4,283,834 - Echvi_3610 0.42 -1.3
4,283,956 - Echvi_3610 0.50 -1.0
4,283,979 + Echvi_3610 0.52 -1.9
4,283,979 + Echvi_3610 0.52 -0.4
4,284,001 + Echvi_3610 0.53 +0.1
4,284,001 + Echvi_3610 0.53 +1.2
4,284,001 + Echvi_3610 0.53 +0.4
4,284,002 - Echvi_3610 0.53 -1.0
4,284,002 - Echvi_3610 0.53 -0.5
4,284,002 - Echvi_3610 0.53 +0.2
4,284,042 + Echvi_3610 0.56 -0.5
4,284,043 - Echvi_3610 0.56 -0.5
4,284,043 - Echvi_3610 0.56 -0.7
4,284,079 + Echvi_3610 0.58 +1.4
4,284,080 - Echvi_3610 0.58 -0.1
4,284,080 - Echvi_3610 0.58 +0.1
4,284,096 - Echvi_3610 0.60 -0.5
4,284,096 - Echvi_3610 0.60 +0.3
4,284,096 - Echvi_3610 0.60 -0.0
4,284,111 + Echvi_3610 0.60 +1.7
4,284,140 + Echvi_3610 0.62 -0.5
4,284,140 + Echvi_3610 0.62 -0.3
4,284,150 + Echvi_3610 0.63 +0.6
4,284,150 + Echvi_3610 0.63 -0.2
4,284,181 - Echvi_3610 0.65 +1.8
4,284,181 - Echvi_3610 0.65 -0.2
4,284,185 + Echvi_3610 0.65 +1.0
4,284,222 + Echvi_3610 0.68 -0.0
4,284,244 + Echvi_3610 0.69 +1.8
4,284,271 + Echvi_3610 0.71 +0.1
4,284,282 + Echvi_3610 0.72 +0.7
4,284,375 - Echvi_3610 0.78 -0.4
4,284,375 - Echvi_3610 0.78 +0.1
4,284,384 + Echvi_3610 0.78 +0.8
4,284,391 + Echvi_3610 0.79 -0.8
4,284,391 + Echvi_3610 0.79 -0.9
4,284,392 - Echvi_3610 0.79 +0.6
4,284,392 - Echvi_3610 0.79 +0.5
4,284,402 + Echvi_3610 0.79 -0.7
4,284,402 + Echvi_3610 0.79 -0.5
4,284,402 + Echvi_3610 0.79 -0.9
4,284,402 + Echvi_3610 0.79 -0.3
4,284,403 - Echvi_3610 0.79 +1.2
4,284,403 - Echvi_3610 0.79 +1.7
4,284,403 - Echvi_3610 0.79 +0.9
4,284,404 + Echvi_3610 0.80 -0.3
4,284,405 - Echvi_3610 0.80 -0.6
4,284,405 - Echvi_3610 0.80 +1.2
4,284,405 - Echvi_3610 0.80 +0.0
4,284,412 + Echvi_3610 0.80 -0.7
4,284,413 - Echvi_3610 0.80 +0.4
4,284,420 + Echvi_3610 0.81 -0.0
4,284,446 + Echvi_3610 0.82 +1.2
4,284,446 + Echvi_3610 0.82 -0.4
4,284,447 - Echvi_3610 0.82 -0.5
4,284,449 + Echvi_3610 0.82 -1.0
4,284,449 + Echvi_3610 0.82 +0.8
4,284,450 - Echvi_3610 0.83 +0.3
4,284,470 - Echvi_3610 0.84 -0.7
4,284,470 - Echvi_3610 0.84 +0.7
4,284,481 - Echvi_3610 0.85 -1.7
4,284,571 + -0.0
4,284,571 + -0.4
4,284,572 - -0.2
4,284,572 - -0.3
4,284,572 - -0.3
4,284,618 + +0.4
4,284,621 + +0.1
4,284,622 - -0.4
4,284,622 - -0.4
4,284,686 - -0.4
4,284,687 + +0.5
4,284,736 - -0.4
4,284,766 - +0.1
4,284,771 + -0.2
4,284,821 + Echvi_3611 0.22 -1.2
4,284,890 - Echvi_3611 0.41 +0.6
4,284,904 + Echvi_3611 0.45 -0.1
4,284,930 - Echvi_3611 0.53 -2.5
4,284,941 + Echvi_3611 0.56 -0.3
4,284,951 + Echvi_3611 0.58 -1.0
4,285,011 + Echvi_3611 0.75 -0.5
4,285,011 + Echvi_3611 0.75 -0.9
4,285,017 + Echvi_3611 0.77 -1.0
4,285,017 + Echvi_3611 0.77 +0.9
4,285,018 - Echvi_3611 0.77 -1.3
4,285,018 - Echvi_3611 0.77 -0.3
4,285,022 + Echvi_3611 0.78 -2.0
4,285,023 - Echvi_3611 0.78 -1.1
4,285,081 - +2.2
4,285,087 - +0.1
4,285,136 - -0.3
4,285,157 + -0.3
4,285,162 - -0.6
4,285,163 + +1.0
4,285,164 - -1.0
4,285,179 - -0.9
4,285,183 - -0.1
4,285,185 - +0.6
4,285,185 - +0.4
4,285,290 + +0.4
4,285,290 + -0.2
4,285,293 + -0.8
4,285,372 + +1.8
4,285,372 + -0.3
4,285,373 - +0.0
4,285,387 + -0.2
4,285,387 + -0.2
4,285,387 + -0.3
4,285,387 + -0.6
4,285,388 - -0.7
4,285,394 - -0.6
4,285,416 + -0.7
4,285,417 - +0.6
4,285,417 - +0.3
4,285,502 + -0.7
4,285,502 + +0.3
4,285,503 - -0.1
4,285,503 - -1.4
4,285,561 + +0.9
4,285,655 + Echvi_3612 0.15 -0.4
4,285,674 + Echvi_3612 0.16 +0.1
4,285,727 + Echvi_3612 0.19 -0.0
4,285,727 + Echvi_3612 0.19 -0.2
4,285,791 - Echvi_3612 0.23 -1.5
4,285,811 - Echvi_3612 0.24 -0.4
4,285,840 + Echvi_3612 0.26 +0.8
4,285,841 - Echvi_3612 0.26 -0.8
4,285,900 - Echvi_3612 0.30 +0.5
4,285,926 + Echvi_3612 0.31 +0.4
4,285,926 + Echvi_3612 0.31 -0.9
4,285,926 + Echvi_3612 0.31 +0.4
4,285,927 - Echvi_3612 0.31 +1.6
4,285,947 + Echvi_3612 0.32 +1.3
4,285,948 - Echvi_3612 0.32 -1.2
4,286,013 - Echvi_3612 0.36 +1.7
4,286,022 + Echvi_3612 0.37 +0.7
4,286,022 + Echvi_3612 0.37 -1.5
4,286,023 - Echvi_3612 0.37 -1.9
4,286,025 - Echvi_3612 0.37 -0.9
4,286,027 - Echvi_3612 0.37 -0.1
4,286,078 - Echvi_3612 0.40 -0.2

Or see this region's nucleotide sequence