Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0335

Experiment: m.b. perchlorate 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0334 and Echvi_0335 are separated by 2 nucleotidesEchvi_0335 and Echvi_0336 are separated by 156 nucleotidesEchvi_0336 and Echvi_0337 are separated by 141 nucleotides Echvi_0334: Echvi_0334 - hypothetical protein, at 351,720 to 357,350 _0334 Echvi_0335: Echvi_0335 - Uncharacterized protein conserved in bacteria, at 357,353 to 358,105 _0335 Echvi_0336: Echvi_0336 - rare lipoprotein A, at 358,262 to 358,624 _0336 Echvi_0337: Echvi_0337 - 3-phosphoglycerate kinase, at 358,766 to 359,965 _0337 Position (kb) 357 358 359Strain fitness (log2 ratio) -2 -1 0 1 2at 356.388 kb on + strand, within Echvi_0334at 356.389 kb on - strand, within Echvi_0334at 356.394 kb on + strand, within Echvi_0334at 356.447 kb on + strand, within Echvi_0334at 356.447 kb on + strand, within Echvi_0334at 356.448 kb on - strand, within Echvi_0334at 356.482 kb on + strand, within Echvi_0334at 356.483 kb on - strand, within Echvi_0334at 356.483 kb on - strand, within Echvi_0334at 356.521 kb on + strand, within Echvi_0334at 356.609 kb on + strand, within Echvi_0334at 356.645 kb on + strand, within Echvi_0334at 356.646 kb on - strand, within Echvi_0334at 356.646 kb on - strand, within Echvi_0334at 356.646 kb on - strand, within Echvi_0334at 356.648 kb on - strand, within Echvi_0334at 356.648 kb on - strand, within Echvi_0334at 356.648 kb on - strand, within Echvi_0334at 356.648 kb on - strand, within Echvi_0334at 356.684 kb on + strand, within Echvi_0334at 356.685 kb on - strand, within Echvi_0334at 356.853 kb on + strandat 356.854 kb on - strandat 356.916 kb on + strandat 356.917 kb on - strandat 356.985 kb on + strandat 356.985 kb on + strandat 356.986 kb on - strandat 356.986 kb on - strandat 356.986 kb on - strandat 356.986 kb on - strandat 357.040 kb on + strandat 357.040 kb on + strandat 357.041 kb on - strandat 357.041 kb on - strandat 357.041 kb on - strandat 357.043 kb on + strandat 357.043 kb on + strandat 357.044 kb on - strandat 357.044 kb on - strandat 357.044 kb on - strandat 357.117 kb on + strandat 357.117 kb on + strandat 357.117 kb on + strandat 357.117 kb on + strandat 357.117 kb on + strandat 357.118 kb on - strandat 357.156 kb on + strandat 357.280 kb on + strandat 357.284 kb on + strandat 357.284 kb on + strandat 357.284 kb on + strandat 357.285 kb on - strandat 357.285 kb on - strandat 357.285 kb on - strandat 357.285 kb on - strandat 357.285 kb on - strandat 357.333 kb on - strandat 357.340 kb on + strandat 357.340 kb on + strandat 357.340 kb on + strandat 357.343 kb on + strandat 357.348 kb on + strandat 357.349 kb on - strandat 357.352 kb on + strandat 357.394 kb on + strandat 357.395 kb on - strandat 357.395 kb on - strandat 357.397 kb on + strandat 357.398 kb on - strandat 357.511 kb on + strand, within Echvi_0335at 357.512 kb on - strand, within Echvi_0335at 357.515 kb on - strand, within Echvi_0335at 357.539 kb on + strand, within Echvi_0335at 357.636 kb on - strand, within Echvi_0335at 357.729 kb on - strand, within Echvi_0335at 357.941 kb on + strand, within Echvi_0335at 357.993 kb on - strand, within Echvi_0335at 357.993 kb on - strand, within Echvi_0335at 357.994 kb on + strand, within Echvi_0335at 357.994 kb on + strand, within Echvi_0335at 357.995 kb on - strand, within Echvi_0335at 358.036 kb on - strandat 358.036 kb on - strandat 358.036 kb on - strandat 358.169 kb on + strandat 358.193 kb on + strandat 358.204 kb on + strandat 358.222 kb on + strandat 358.222 kb on + strandat 358.222 kb on + strandat 358.260 kb on - strandat 358.262 kb on - strandat 358.275 kb on + strandat 358.276 kb on - strandat 358.276 kb on - strandat 358.368 kb on - strand, within Echvi_0336at 358.615 kb on - strandat 358.615 kb on - strandat 358.620 kb on - strandat 358.727 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 75 mM
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356,388 + Echvi_0334 0.83 +0.8
356,389 - Echvi_0334 0.83 +1.0
356,394 + Echvi_0334 0.83 +0.5
356,447 + Echvi_0334 0.84 +1.2
356,447 + Echvi_0334 0.84 -0.3
356,448 - Echvi_0334 0.84 +0.4
356,482 + Echvi_0334 0.85 +0.6
356,483 - Echvi_0334 0.85 -0.9
356,483 - Echvi_0334 0.85 +0.7
356,521 + Echvi_0334 0.85 +0.1
356,609 + Echvi_0334 0.87 +0.3
356,645 + Echvi_0334 0.87 +0.3
356,646 - Echvi_0334 0.87 +0.1
356,646 - Echvi_0334 0.87 +0.3
356,646 - Echvi_0334 0.87 +0.5
356,648 - Echvi_0334 0.88 +0.3
356,648 - Echvi_0334 0.88 +0.3
356,648 - Echvi_0334 0.88 +0.5
356,648 - Echvi_0334 0.88 -1.9
356,684 + Echvi_0334 0.88 -0.3
356,685 - Echvi_0334 0.88 +0.8
356,853 + +0.2
356,854 - +1.0
356,916 + +0.7
356,917 - -0.4
356,985 + +0.6
356,985 + -0.3
356,986 - +0.1
356,986 - +0.5
356,986 - +0.9
356,986 - +0.6
357,040 + +0.2
357,040 + +0.4
357,041 - +0.7
357,041 - +0.2
357,041 - -0.7
357,043 + +0.6
357,043 + +0.2
357,044 - +0.9
357,044 - +0.1
357,044 - +0.7
357,117 + +0.1
357,117 + -0.1
357,117 + +1.4
357,117 + +1.2
357,117 + -0.2
357,118 - -0.1
357,156 + +0.8
357,280 + -0.1
357,284 + -0.7
357,284 + +1.1
357,284 + +0.6
357,285 - +0.5
357,285 - +0.8
357,285 - -0.2
357,285 - +0.3
357,285 - +1.2
357,333 - -0.0
357,340 + -1.2
357,340 + -0.0
357,340 + -0.8
357,343 + +0.0
357,348 + -1.3
357,349 - +0.3
357,352 + -0.3
357,394 + -0.5
357,395 - -0.4
357,395 - -1.2
357,397 + +0.8
357,398 - +0.2
357,511 + Echvi_0335 0.21 -0.5
357,512 - Echvi_0335 0.21 -0.3
357,515 - Echvi_0335 0.22 -0.8
357,539 + Echvi_0335 0.25 -1.3
357,636 - Echvi_0335 0.38 +1.4
357,729 - Echvi_0335 0.50 -0.1
357,941 + Echvi_0335 0.78 +0.8
357,993 - Echvi_0335 0.85 -0.3
357,993 - Echvi_0335 0.85 +0.0
357,994 + Echvi_0335 0.85 -0.1
357,994 + Echvi_0335 0.85 -0.8
357,995 - Echvi_0335 0.85 +0.4
358,036 - +1.1
358,036 - -0.1
358,036 - -0.2
358,169 + +0.6
358,193 + -0.6
358,204 + -0.8
358,222 + +0.0
358,222 + -0.5
358,222 + -1.2
358,260 - -0.5
358,262 - -0.5
358,275 + -0.1
358,276 - -0.3
358,276 - -0.6
358,368 - Echvi_0336 0.29 +1.4
358,615 - -0.5
358,615 - -1.2
358,620 - -1.1
358,727 + +2.2

Or see this region's nucleotide sequence