Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4344

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4343 and EX28DRAFT_4344 are separated by 138 nucleotidesEX28DRAFT_4344 and EX28DRAFT_4345 are separated by 54 nucleotidesEX28DRAFT_4345 and EX28DRAFT_4346 are separated by 265 nucleotides EX28DRAFT_4343: EX28DRAFT_4343 - DNA polymerase I (EC 2.7.7.7), at 4,897 to 7,689 _4343 EX28DRAFT_4344: EX28DRAFT_4344 - RNA, at 7,828 to 7,946 _4344 EX28DRAFT_4345: EX28DRAFT_4345 - ribosome biogenesis GTP-binding protein YsxC/EngB, at 8,001 to 8,630 _4345 EX28DRAFT_4346: EX28DRAFT_4346 - RNA, at 8,896 to 9,150 _4346 Position (kb) 7 8Strain fitness (log2 ratio) -2 -1 0 1 2at 7.852 kb on + strand, within EX28DRAFT_4344at 7.852 kb on + strand, within EX28DRAFT_4344at 7.852 kb on + strand, within EX28DRAFT_4344at 7.853 kb on - strand, within EX28DRAFT_4344at 7.862 kb on + strand, within EX28DRAFT_4344at 7.862 kb on + strand, within EX28DRAFT_4344at 8.666 kb on - strandat 8.702 kb on - strandat 8.702 kb on - strandat 8.868 kb on - strandat 8.886 kb on - strandat 8.928 kb on - strand, within EX28DRAFT_4346

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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7,852 + EX28DRAFT_4344 0.20 +0.2
7,852 + EX28DRAFT_4344 0.20 -0.7
7,852 + EX28DRAFT_4344 0.20 -2.2
7,853 - EX28DRAFT_4344 0.21 -0.4
7,862 + EX28DRAFT_4344 0.29 -0.1
7,862 + EX28DRAFT_4344 0.29 -0.5
8,666 - +0.2
8,702 - -1.7
8,702 - +1.9
8,868 - -0.8
8,886 - +0.8
8,928 - EX28DRAFT_4346 0.13 +0.5

Or see this region's nucleotide sequence