Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4234

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4232 and EX28DRAFT_4233 are separated by 135 nucleotidesEX28DRAFT_4233 and EX28DRAFT_4234 overlap by 4 nucleotidesEX28DRAFT_4234 and EX28DRAFT_4235 are separated by 32 nucleotidesEX28DRAFT_4235 and EX28DRAFT_4236 overlap by 8 nucleotides EX28DRAFT_4232: EX28DRAFT_4232 - acetate--CoA ligase, at 37,704 to 39,662 _4232 EX28DRAFT_4233: EX28DRAFT_4233 - Predicted membrane protein, at 39,798 to 40,112 _4233 EX28DRAFT_4234: EX28DRAFT_4234 - cation/acetate symporter ActP, at 40,109 to 41,758 _4234 EX28DRAFT_4235: EX28DRAFT_4235 - Putative effector of murein hydrolase, at 41,791 to 42,480 _4235 EX28DRAFT_4236: EX28DRAFT_4236 - Putative effector of murein hydrolase LrgA, at 42,473 to 42,883 _4236 Position (kb) 40 41 42Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 39.165 kb on + strand, within EX28DRAFT_4232at 39.165 kb on + strand, within EX28DRAFT_4232at 39.189 kb on + strand, within EX28DRAFT_4232at 39.189 kb on + strand, within EX28DRAFT_4232at 39.189 kb on + strand, within EX28DRAFT_4232at 39.229 kb on - strand, within EX28DRAFT_4232at 39.229 kb on - strand, within EX28DRAFT_4232at 39.387 kb on + strand, within EX28DRAFT_4232at 39.387 kb on + strand, within EX28DRAFT_4232at 39.387 kb on + strand, within EX28DRAFT_4232at 39.388 kb on - strand, within EX28DRAFT_4232at 39.430 kb on - strand, within EX28DRAFT_4232at 39.430 kb on - strand, within EX28DRAFT_4232at 39.430 kb on - strand, within EX28DRAFT_4232at 39.455 kb on + strand, within EX28DRAFT_4232at 39.533 kb on + strandat 39.534 kb on - strandat 39.542 kb on + strandat 39.542 kb on + strandat 39.542 kb on + strandat 39.543 kb on - strandat 39.774 kb on + strandat 39.775 kb on - strandat 39.775 kb on - strandat 39.779 kb on + strandat 39.779 kb on + strandat 39.779 kb on + strandat 39.779 kb on + strandat 39.780 kb on - strandat 39.809 kb on + strandat 39.810 kb on - strandat 39.830 kb on + strand, within EX28DRAFT_4233at 39.906 kb on + strand, within EX28DRAFT_4233at 39.906 kb on + strand, within EX28DRAFT_4233at 39.907 kb on - strand, within EX28DRAFT_4233at 39.918 kb on - strand, within EX28DRAFT_4233at 39.918 kb on - strand, within EX28DRAFT_4233at 40.076 kb on + strand, within EX28DRAFT_4233at 40.077 kb on - strand, within EX28DRAFT_4233at 40.079 kb on + strand, within EX28DRAFT_4233at 40.099 kb on + strandat 40.099 kb on + strandat 40.250 kb on + strandat 40.250 kb on + strandat 40.259 kb on + strandat 40.298 kb on + strand, within EX28DRAFT_4234at 40.315 kb on + strand, within EX28DRAFT_4234at 40.315 kb on + strand, within EX28DRAFT_4234at 40.315 kb on + strand, within EX28DRAFT_4234at 40.357 kb on + strand, within EX28DRAFT_4234at 40.357 kb on + strand, within EX28DRAFT_4234at 40.425 kb on - strand, within EX28DRAFT_4234at 40.501 kb on + strand, within EX28DRAFT_4234at 40.501 kb on + strand, within EX28DRAFT_4234at 40.502 kb on - strand, within EX28DRAFT_4234at 40.590 kb on - strand, within EX28DRAFT_4234at 40.590 kb on - strand, within EX28DRAFT_4234at 40.649 kb on + strand, within EX28DRAFT_4234at 40.650 kb on - strand, within EX28DRAFT_4234at 40.691 kb on + strand, within EX28DRAFT_4234at 40.691 kb on + strand, within EX28DRAFT_4234at 40.691 kb on + strand, within EX28DRAFT_4234at 40.691 kb on + strand, within EX28DRAFT_4234at 40.691 kb on + strand, within EX28DRAFT_4234at 40.691 kb on + strand, within EX28DRAFT_4234at 40.691 kb on + strand, within EX28DRAFT_4234at 40.692 kb on - strand, within EX28DRAFT_4234at 40.692 kb on - strand, within EX28DRAFT_4234at 40.692 kb on - strand, within EX28DRAFT_4234at 40.780 kb on + strand, within EX28DRAFT_4234at 41.007 kb on - strand, within EX28DRAFT_4234at 41.007 kb on - strand, within EX28DRAFT_4234at 41.027 kb on + strand, within EX28DRAFT_4234at 41.027 kb on + strand, within EX28DRAFT_4234at 41.220 kb on + strand, within EX28DRAFT_4234at 41.271 kb on - strand, within EX28DRAFT_4234at 41.398 kb on + strand, within EX28DRAFT_4234at 41.398 kb on + strand, within EX28DRAFT_4234at 41.399 kb on - strand, within EX28DRAFT_4234at 41.462 kb on + strand, within EX28DRAFT_4234at 41.463 kb on - strand, within EX28DRAFT_4234at 41.463 kb on - strand, within EX28DRAFT_4234at 41.463 kb on - strand, within EX28DRAFT_4234at 41.595 kb on - strandat 41.793 kb on - strandat 41.834 kb on - strandat 41.985 kb on + strand, within EX28DRAFT_4235at 42.225 kb on + strand, within EX28DRAFT_4235at 42.311 kb on + strand, within EX28DRAFT_4235at 42.311 kb on + strand, within EX28DRAFT_4235at 42.328 kb on - strand, within EX28DRAFT_4235at 42.429 kb on - strandat 42.433 kb on - strandat 42.433 kb on - strandat 42.436 kb on + strandat 42.508 kb on - strandat 42.609 kb on + strand, within EX28DRAFT_4236at 42.610 kb on - strand, within EX28DRAFT_4236at 42.716 kb on - strand, within EX28DRAFT_4236

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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39,165 + EX28DRAFT_4232 0.75 +1.4
39,165 + EX28DRAFT_4232 0.75 -0.2
39,189 + EX28DRAFT_4232 0.76 +0.3
39,189 + EX28DRAFT_4232 0.76 -3.3
39,189 + EX28DRAFT_4232 0.76 +0.6
39,229 - EX28DRAFT_4232 0.78 +0.0
39,229 - EX28DRAFT_4232 0.78 +0.0
39,387 + EX28DRAFT_4232 0.86 +1.0
39,387 + EX28DRAFT_4232 0.86 +1.8
39,387 + EX28DRAFT_4232 0.86 +1.0
39,388 - EX28DRAFT_4232 0.86 +0.6
39,430 - EX28DRAFT_4232 0.88 -0.1
39,430 - EX28DRAFT_4232 0.88 -0.2
39,430 - EX28DRAFT_4232 0.88 -2.7
39,455 + EX28DRAFT_4232 0.89 -0.1
39,533 + +0.8
39,534 - +0.3
39,542 + +1.1
39,542 + -0.0
39,542 + -2.2
39,543 - +0.1
39,774 + +0.7
39,775 - +1.1
39,775 - -0.1
39,779 + -0.1
39,779 + +0.8
39,779 + -1.1
39,779 + -3.8
39,780 - -3.9
39,809 + -0.3
39,810 - +0.1
39,830 + EX28DRAFT_4233 0.10 +0.4
39,906 + EX28DRAFT_4233 0.34 +0.2
39,906 + EX28DRAFT_4233 0.34 +0.8
39,907 - EX28DRAFT_4233 0.35 -0.6
39,918 - EX28DRAFT_4233 0.38 +1.0
39,918 - EX28DRAFT_4233 0.38 +0.2
40,076 + EX28DRAFT_4233 0.88 +0.6
40,077 - EX28DRAFT_4233 0.89 -0.9
40,079 + EX28DRAFT_4233 0.89 -0.6
40,099 + +0.5
40,099 + +1.0
40,250 + +0.5
40,250 + -1.0
40,259 + +0.7
40,298 + EX28DRAFT_4234 0.11 -0.3
40,315 + EX28DRAFT_4234 0.12 +0.8
40,315 + EX28DRAFT_4234 0.12 -1.5
40,315 + EX28DRAFT_4234 0.12 +0.2
40,357 + EX28DRAFT_4234 0.15 +1.1
40,357 + EX28DRAFT_4234 0.15 -0.3
40,425 - EX28DRAFT_4234 0.19 -2.0
40,501 + EX28DRAFT_4234 0.24 +0.8
40,501 + EX28DRAFT_4234 0.24 +0.7
40,502 - EX28DRAFT_4234 0.24 -1.2
40,590 - EX28DRAFT_4234 0.29 +0.2
40,590 - EX28DRAFT_4234 0.29 +0.0
40,649 + EX28DRAFT_4234 0.33 -1.0
40,650 - EX28DRAFT_4234 0.33 +0.2
40,691 + EX28DRAFT_4234 0.35 -1.0
40,691 + EX28DRAFT_4234 0.35 -4.0
40,691 + EX28DRAFT_4234 0.35 +0.1
40,691 + EX28DRAFT_4234 0.35 +0.7
40,691 + EX28DRAFT_4234 0.35 +0.5
40,691 + EX28DRAFT_4234 0.35 +2.4
40,691 + EX28DRAFT_4234 0.35 +0.6
40,692 - EX28DRAFT_4234 0.35 -0.1
40,692 - EX28DRAFT_4234 0.35 +1.1
40,692 - EX28DRAFT_4234 0.35 -2.6
40,780 + EX28DRAFT_4234 0.41 -4.4
41,007 - EX28DRAFT_4234 0.54 +0.2
41,007 - EX28DRAFT_4234 0.54 +0.8
41,027 + EX28DRAFT_4234 0.56 -0.0
41,027 + EX28DRAFT_4234 0.56 -0.3
41,220 + EX28DRAFT_4234 0.67 -0.0
41,271 - EX28DRAFT_4234 0.70 +2.1
41,398 + EX28DRAFT_4234 0.78 +1.2
41,398 + EX28DRAFT_4234 0.78 -0.1
41,399 - EX28DRAFT_4234 0.78 -1.9
41,462 + EX28DRAFT_4234 0.82 +0.8
41,463 - EX28DRAFT_4234 0.82 +0.8
41,463 - EX28DRAFT_4234 0.82 -2.0
41,463 - EX28DRAFT_4234 0.82 -0.3
41,595 - +0.6
41,793 - -0.1
41,834 - -0.2
41,985 + EX28DRAFT_4235 0.28 -1.1
42,225 + EX28DRAFT_4235 0.63 +1.8
42,311 + EX28DRAFT_4235 0.75 +2.0
42,311 + EX28DRAFT_4235 0.75 -1.3
42,328 - EX28DRAFT_4235 0.78 +0.7
42,429 - +0.5
42,433 - +1.0
42,433 - +0.2
42,436 + -0.9
42,508 - -0.4
42,609 + EX28DRAFT_4236 0.33 -4.0
42,610 - EX28DRAFT_4236 0.33 +0.4
42,716 - EX28DRAFT_4236 0.59 +0.2

Or see this region's nucleotide sequence