Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4217

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_4216 and EX28DRAFT_4217 overlap by 4 nucleotidesEX28DRAFT_4217 and EX28DRAFT_4218 are separated by 32 nucleotides EX28DRAFT_4216: EX28DRAFT_4216 - ABC-type sugar transport system, ATPase component, at 22,804 to 24,324 _4216 EX28DRAFT_4217: EX28DRAFT_4217 - Predicted ABC-type sugar transport system, permease component, at 24,321 to 25,316 _4217 EX28DRAFT_4218: EX28DRAFT_4218 - ABC-type sugar transport system, periplasmic component, at 25,349 to 26,290 _4218 Position (kb) 24 25 26Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 23.392 kb on + strand, within EX28DRAFT_4216at 23.392 kb on + strand, within EX28DRAFT_4216at 23.392 kb on + strand, within EX28DRAFT_4216at 23.392 kb on + strand, within EX28DRAFT_4216at 23.392 kb on + strand, within EX28DRAFT_4216at 23.392 kb on + strand, within EX28DRAFT_4216at 23.393 kb on - strand, within EX28DRAFT_4216at 23.393 kb on - strand, within EX28DRAFT_4216at 23.393 kb on - strand, within EX28DRAFT_4216at 23.393 kb on - strand, within EX28DRAFT_4216at 23.393 kb on - strand, within EX28DRAFT_4216at 23.393 kb on - strand, within EX28DRAFT_4216at 23.393 kb on - strand, within EX28DRAFT_4216at 23.393 kb on - strand, within EX28DRAFT_4216at 23.394 kb on + strand, within EX28DRAFT_4216at 23.419 kb on + strand, within EX28DRAFT_4216at 23.419 kb on + strand, within EX28DRAFT_4216at 23.462 kb on - strand, within EX28DRAFT_4216at 23.462 kb on - strand, within EX28DRAFT_4216at 23.489 kb on + strand, within EX28DRAFT_4216at 23.906 kb on + strand, within EX28DRAFT_4216at 24.155 kb on + strand, within EX28DRAFT_4216at 24.206 kb on - strandat 24.226 kb on - strandat 24.226 kb on - strandat 24.744 kb on + strand, within EX28DRAFT_4217at 24.744 kb on + strand, within EX28DRAFT_4217at 24.745 kb on - strand, within EX28DRAFT_4217at 24.768 kb on + strand, within EX28DRAFT_4217at 24.797 kb on + strand, within EX28DRAFT_4217at 24.797 kb on + strand, within EX28DRAFT_4217at 24.834 kb on + strand, within EX28DRAFT_4217at 24.835 kb on - strand, within EX28DRAFT_4217at 24.835 kb on - strand, within EX28DRAFT_4217at 24.835 kb on - strand, within EX28DRAFT_4217at 24.930 kb on + strand, within EX28DRAFT_4217at 24.930 kb on + strand, within EX28DRAFT_4217at 24.931 kb on - strand, within EX28DRAFT_4217at 24.931 kb on - strand, within EX28DRAFT_4217at 24.975 kb on - strand, within EX28DRAFT_4217at 25.003 kb on - strand, within EX28DRAFT_4217at 25.007 kb on + strand, within EX28DRAFT_4217at 25.007 kb on + strand, within EX28DRAFT_4217at 25.007 kb on + strand, within EX28DRAFT_4217at 25.008 kb on - strand, within EX28DRAFT_4217at 25.227 kb on + strandat 25.267 kb on + strandat 25.287 kb on + strandat 25.288 kb on - strandat 25.314 kb on + strandat 25.314 kb on + strandat 25.315 kb on - strandat 25.329 kb on - strandat 25.343 kb on + strandat 25.343 kb on + strandat 25.345 kb on - strandat 25.346 kb on + strandat 25.346 kb on + strandat 25.346 kb on + strandat 25.346 kb on + strandat 25.346 kb on + strandat 25.347 kb on - strandat 25.347 kb on - strandat 25.347 kb on - strandat 25.348 kb on + strandat 25.348 kb on + strandat 25.348 kb on + strandat 25.349 kb on - strandat 25.768 kb on + strand, within EX28DRAFT_4218at 25.769 kb on - strand, within EX28DRAFT_4218at 25.769 kb on - strand, within EX28DRAFT_4218at 25.769 kb on - strand, within EX28DRAFT_4218at 25.769 kb on - strand, within EX28DRAFT_4218at 25.772 kb on + strand, within EX28DRAFT_4218at 25.772 kb on + strand, within EX28DRAFT_4218at 25.773 kb on - strand, within EX28DRAFT_4218at 25.773 kb on - strand, within EX28DRAFT_4218at 25.949 kb on - strand, within EX28DRAFT_4218at 26.267 kb on + strandat 26.267 kb on + strandat 26.267 kb on + strandat 26.267 kb on + strandat 26.267 kb on + strandat 26.268 kb on - strandat 26.268 kb on - strandat 26.268 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
remove
23,392 + EX28DRAFT_4216 0.39 +0.5
23,392 + EX28DRAFT_4216 0.39 -0.9
23,392 + EX28DRAFT_4216 0.39 +0.2
23,392 + EX28DRAFT_4216 0.39 -3.0
23,392 + EX28DRAFT_4216 0.39 -0.9
23,392 + EX28DRAFT_4216 0.39 -0.4
23,393 - EX28DRAFT_4216 0.39 +0.7
23,393 - EX28DRAFT_4216 0.39 +0.7
23,393 - EX28DRAFT_4216 0.39 -0.4
23,393 - EX28DRAFT_4216 0.39 +0.4
23,393 - EX28DRAFT_4216 0.39 -0.3
23,393 - EX28DRAFT_4216 0.39 +1.1
23,393 - EX28DRAFT_4216 0.39 +0.6
23,393 - EX28DRAFT_4216 0.39 -2.9
23,394 + EX28DRAFT_4216 0.39 -0.1
23,419 + EX28DRAFT_4216 0.40 -1.5
23,419 + EX28DRAFT_4216 0.40 -0.4
23,462 - EX28DRAFT_4216 0.43 +0.2
23,462 - EX28DRAFT_4216 0.43 -3.5
23,489 + EX28DRAFT_4216 0.45 -0.6
23,906 + EX28DRAFT_4216 0.72 +0.8
24,155 + EX28DRAFT_4216 0.89 +1.0
24,206 - +0.7
24,226 - +0.2
24,226 - +0.6
24,744 + EX28DRAFT_4217 0.42 -0.3
24,744 + EX28DRAFT_4217 0.42 -0.8
24,745 - EX28DRAFT_4217 0.43 -1.3
24,768 + EX28DRAFT_4217 0.45 -0.1
24,797 + EX28DRAFT_4217 0.48 -0.4
24,797 + EX28DRAFT_4217 0.48 -0.2
24,834 + EX28DRAFT_4217 0.52 +0.0
24,835 - EX28DRAFT_4217 0.52 -0.1
24,835 - EX28DRAFT_4217 0.52 +0.6
24,835 - EX28DRAFT_4217 0.52 -0.2
24,930 + EX28DRAFT_4217 0.61 -2.2
24,930 + EX28DRAFT_4217 0.61 -0.9
24,931 - EX28DRAFT_4217 0.61 +0.5
24,931 - EX28DRAFT_4217 0.61 +1.0
24,975 - EX28DRAFT_4217 0.66 +0.5
25,003 - EX28DRAFT_4217 0.68 -0.1
25,007 + EX28DRAFT_4217 0.69 +0.5
25,007 + EX28DRAFT_4217 0.69 -0.1
25,007 + EX28DRAFT_4217 0.69 -2.4
25,008 - EX28DRAFT_4217 0.69 +0.2
25,227 + -0.6
25,267 + -2.2
25,287 + +0.8
25,288 - -0.9
25,314 + +0.6
25,314 + -0.6
25,315 - -1.7
25,329 - +0.9
25,343 + +0.7
25,343 + +0.8
25,345 - -0.1
25,346 + +1.8
25,346 + +1.2
25,346 + -0.1
25,346 + +1.7
25,346 + -0.0
25,347 - -0.5
25,347 - -2.0
25,347 - +0.6
25,348 + +1.5
25,348 + +0.8
25,348 + +0.3
25,349 - -0.0
25,768 + EX28DRAFT_4218 0.44 +0.0
25,769 - EX28DRAFT_4218 0.45 +0.1
25,769 - EX28DRAFT_4218 0.45 +0.2
25,769 - EX28DRAFT_4218 0.45 -1.1
25,769 - EX28DRAFT_4218 0.45 +0.2
25,772 + EX28DRAFT_4218 0.45 -0.9
25,772 + EX28DRAFT_4218 0.45 +0.7
25,773 - EX28DRAFT_4218 0.45 -0.1
25,773 - EX28DRAFT_4218 0.45 +0.4
25,949 - EX28DRAFT_4218 0.64 +0.4
26,267 + -1.7
26,267 + +0.6
26,267 + +0.4
26,267 + +0.2
26,267 + +0.6
26,268 - +0.6
26,268 - +2.5
26,268 - -1.6

Or see this region's nucleotide sequence