Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4195

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4194 and EX28DRAFT_4195 are separated by 648 nucleotidesEX28DRAFT_4195 and EX28DRAFT_4196 are separated by 51 nucleotidesEX28DRAFT_4196 and EX28DRAFT_4197 overlap by 4 nucleotides EX28DRAFT_4194: EX28DRAFT_4194 - metabolite-proton symporter, at 1,210 to 2,712 _4194 EX28DRAFT_4195: EX28DRAFT_4195 - 2-keto-3-deoxygluconate transporter, at 3,361 to 4,353 _4195 EX28DRAFT_4196: EX28DRAFT_4196 - YjcZ-like protein, at 4,405 to 5,280 _4196 EX28DRAFT_4197: EX28DRAFT_4197 - Dynamin family, at 5,277 to 7,631 _4197 Position (kb) 3 4 5Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2.365 kb on + strand, within EX28DRAFT_4194at 2.366 kb on - strand, within EX28DRAFT_4194at 2.367 kb on + strand, within EX28DRAFT_4194at 2.367 kb on + strand, within EX28DRAFT_4194at 2.385 kb on + strand, within EX28DRAFT_4194at 2.386 kb on - strand, within EX28DRAFT_4194at 2.397 kb on + strand, within EX28DRAFT_4194at 2.435 kb on + strand, within EX28DRAFT_4194at 2.435 kb on + strand, within EX28DRAFT_4194at 2.435 kb on + strand, within EX28DRAFT_4194at 2.435 kb on + strand, within EX28DRAFT_4194at 2.436 kb on - strand, within EX28DRAFT_4194at 2.436 kb on - strand, within EX28DRAFT_4194at 2.503 kb on - strand, within EX28DRAFT_4194at 2.560 kb on + strand, within EX28DRAFT_4194at 2.568 kb on - strandat 2.582 kb on + strandat 2.640 kb on + strandat 2.641 kb on - strandat 2.662 kb on - strandat 2.707 kb on + strandat 2.708 kb on - strandat 2.708 kb on - strandat 2.708 kb on - strandat 2.712 kb on + strandat 2.712 kb on + strandat 2.712 kb on + strandat 2.712 kb on + strandat 2.712 kb on + strandat 2.712 kb on + strandat 2.713 kb on - strandat 2.713 kb on - strandat 2.713 kb on - strandat 2.716 kb on + strandat 2.717 kb on - strandat 2.717 kb on - strandat 2.819 kb on - strandat 2.819 kb on - strandat 2.822 kb on + strandat 2.822 kb on + strandat 2.822 kb on + strandat 2.823 kb on - strandat 2.835 kb on + strandat 3.056 kb on - strandat 3.076 kb on - strandat 3.247 kb on - strandat 3.302 kb on + strandat 3.387 kb on + strandat 3.491 kb on + strand, within EX28DRAFT_4195at 3.570 kb on - strand, within EX28DRAFT_4195at 3.718 kb on - strand, within EX28DRAFT_4195at 3.736 kb on + strand, within EX28DRAFT_4195at 3.737 kb on - strand, within EX28DRAFT_4195at 4.244 kb on + strand, within EX28DRAFT_4195at 4.245 kb on - strand, within EX28DRAFT_4195at 4.286 kb on - strandat 4.306 kb on - strandat 4.468 kb on - strandat 4.563 kb on + strand, within EX28DRAFT_4196at 4.564 kb on - strand, within EX28DRAFT_4196at 4.655 kb on + strand, within EX28DRAFT_4196at 4.655 kb on + strand, within EX28DRAFT_4196at 4.764 kb on + strand, within EX28DRAFT_4196at 4.902 kb on + strand, within EX28DRAFT_4196at 5.233 kb on - strandat 5.235 kb on + strandat 5.236 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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2,365 + EX28DRAFT_4194 0.77 +0.3
2,366 - EX28DRAFT_4194 0.77 +0.3
2,367 + EX28DRAFT_4194 0.77 +0.6
2,367 + EX28DRAFT_4194 0.77 +0.3
2,385 + EX28DRAFT_4194 0.78 -0.4
2,386 - EX28DRAFT_4194 0.78 +0.2
2,397 + EX28DRAFT_4194 0.79 +0.6
2,435 + EX28DRAFT_4194 0.82 +0.2
2,435 + EX28DRAFT_4194 0.82 +0.1
2,435 + EX28DRAFT_4194 0.82 -0.0
2,435 + EX28DRAFT_4194 0.82 +0.4
2,436 - EX28DRAFT_4194 0.82 -0.2
2,436 - EX28DRAFT_4194 0.82 +0.6
2,503 - EX28DRAFT_4194 0.86 +0.5
2,560 + EX28DRAFT_4194 0.90 -1.2
2,568 - +1.6
2,582 + +0.3
2,640 + -0.8
2,641 - +0.1
2,662 - +0.8
2,707 + +0.9
2,708 - +0.4
2,708 - +0.3
2,708 - +1.8
2,712 + +0.8
2,712 + -2.5
2,712 + -0.4
2,712 + -0.1
2,712 + +0.5
2,712 + +0.8
2,713 - -0.1
2,713 - -0.1
2,713 - -3.1
2,716 + -0.1
2,717 - -0.4
2,717 - -0.2
2,819 - +0.8
2,819 - +1.6
2,822 + +0.0
2,822 + -1.5
2,822 + -2.0
2,823 - -0.4
2,835 + +1.5
3,056 - -0.5
3,076 - -0.1
3,247 - +0.6
3,302 + -1.4
3,387 + -0.4
3,491 + EX28DRAFT_4195 0.13 +2.4
3,570 - EX28DRAFT_4195 0.21 +0.2
3,718 - EX28DRAFT_4195 0.36 -2.1
3,736 + EX28DRAFT_4195 0.38 +0.3
3,737 - EX28DRAFT_4195 0.38 +1.1
4,244 + EX28DRAFT_4195 0.89 +0.9
4,245 - EX28DRAFT_4195 0.89 -0.8
4,286 - -0.5
4,306 - -4.0
4,468 - +0.6
4,563 + EX28DRAFT_4196 0.18 +1.1
4,564 - EX28DRAFT_4196 0.18 -0.3
4,655 + EX28DRAFT_4196 0.29 +0.3
4,655 + EX28DRAFT_4196 0.29 +0.3
4,764 + EX28DRAFT_4196 0.41 -0.9
4,902 + EX28DRAFT_4196 0.57 +0.5
5,233 - +0.6
5,235 + +0.1
5,236 - -1.1

Or see this region's nucleotide sequence