Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4160

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_4158 and EX28DRAFT_4159 are separated by 144 nucleotidesEX28DRAFT_4159 and EX28DRAFT_4160 are separated by 142 nucleotidesEX28DRAFT_4160 and EX28DRAFT_4161 are separated by 135 nucleotidesEX28DRAFT_4161 and EX28DRAFT_4162 overlap by 4 nucleotides EX28DRAFT_4158: EX28DRAFT_4158 - tryptophanyl-tRNA synthetase (EC 6.1.1.2), at 138,753 to 139,757 _4158 EX28DRAFT_4159: EX28DRAFT_4159 - Protein of unknown function (DUF4223), at 139,902 to 140,072 _4159 EX28DRAFT_4160: EX28DRAFT_4160 - uroporphyrin-III C-methyltransferase, at 140,215 to 141,588 _4160 EX28DRAFT_4161: EX28DRAFT_4161 - nitrite reductase [NAD(P)H], small subunit, at 141,724 to 142,050 _4161 EX28DRAFT_4162: EX28DRAFT_4162 - nitrite reductase [NAD(P)H], large subunit, at 142,047 to 144,590 _4162 Position (kb) 140 141 142Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 139.777 kb on + strandat 139.777 kb on + strandat 139.778 kb on - strandat 139.778 kb on - strandat 139.778 kb on - strandat 139.903 kb on + strandat 139.969 kb on + strand, within EX28DRAFT_4159at 139.970 kb on - strand, within EX28DRAFT_4159at 139.975 kb on + strand, within EX28DRAFT_4159at 139.976 kb on - strand, within EX28DRAFT_4159at 139.976 kb on - strand, within EX28DRAFT_4159at 139.976 kb on - strand, within EX28DRAFT_4159at 139.986 kb on - strand, within EX28DRAFT_4159at 140.002 kb on - strand, within EX28DRAFT_4159at 140.088 kb on + strandat 140.106 kb on + strandat 140.148 kb on - strandat 140.209 kb on + strandat 140.210 kb on - strandat 140.210 kb on - strandat 140.303 kb on - strandat 140.303 kb on - strandat 140.447 kb on + strand, within EX28DRAFT_4160at 140.448 kb on - strand, within EX28DRAFT_4160at 140.448 kb on - strand, within EX28DRAFT_4160at 140.599 kb on - strand, within EX28DRAFT_4160at 140.850 kb on - strand, within EX28DRAFT_4160at 141.414 kb on + strand, within EX28DRAFT_4160at 141.595 kb on - strandat 141.695 kb on + strandat 141.696 kb on - strandat 141.696 kb on - strandat 141.725 kb on + strandat 141.767 kb on + strand, within EX28DRAFT_4161at 141.767 kb on + strand, within EX28DRAFT_4161at 141.768 kb on - strand, within EX28DRAFT_4161at 141.919 kb on - strand, within EX28DRAFT_4161at 142.033 kb on - strandat 142.079 kb on + strandat 142.079 kb on + strandat 142.079 kb on + strandat 142.088 kb on - strandat 142.131 kb on + strandat 142.131 kb on + strandat 142.132 kb on - strandat 142.132 kb on - strandat 142.304 kb on - strand, within EX28DRAFT_4162at 142.372 kb on + strand, within EX28DRAFT_4162at 142.372 kb on + strand, within EX28DRAFT_4162at 142.478 kb on - strand, within EX28DRAFT_4162

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
remove
139,777 + +1.1
139,777 + -0.4
139,778 - +0.3
139,778 - +0.4
139,778 - -0.4
139,903 + -0.2
139,969 + EX28DRAFT_4159 0.39 -2.1
139,970 - EX28DRAFT_4159 0.40 -2.4
139,975 + EX28DRAFT_4159 0.43 -0.2
139,976 - EX28DRAFT_4159 0.43 -3.4
139,976 - EX28DRAFT_4159 0.43 -1.9
139,976 - EX28DRAFT_4159 0.43 +0.1
139,986 - EX28DRAFT_4159 0.49 +0.3
140,002 - EX28DRAFT_4159 0.58 +1.9
140,088 + -0.0
140,106 + +1.5
140,148 - +0.0
140,209 + +0.8
140,210 - +1.0
140,210 - +0.2
140,303 - -2.9
140,303 - -0.2
140,447 + EX28DRAFT_4160 0.17 +0.4
140,448 - EX28DRAFT_4160 0.17 -0.2
140,448 - EX28DRAFT_4160 0.17 -3.2
140,599 - EX28DRAFT_4160 0.28 -1.1
140,850 - EX28DRAFT_4160 0.46 -4.3
141,414 + EX28DRAFT_4160 0.87 -2.6
141,595 - +0.8
141,695 + -1.1
141,696 - -0.2
141,696 - +0.3
141,725 + +0.4
141,767 + EX28DRAFT_4161 0.13 -0.1
141,767 + EX28DRAFT_4161 0.13 -0.5
141,768 - EX28DRAFT_4161 0.13 -0.5
141,919 - EX28DRAFT_4161 0.60 +1.8
142,033 - +0.3
142,079 + +1.0
142,079 + -0.5
142,079 + +0.4
142,088 - +0.0
142,131 + -0.8
142,131 + -0.3
142,132 - -0.4
142,132 - +0.1
142,304 - EX28DRAFT_4162 0.10 -0.4
142,372 + EX28DRAFT_4162 0.13 +0.2
142,372 + EX28DRAFT_4162 0.13 -0.0
142,478 - EX28DRAFT_4162 0.17 -0.0

Or see this region's nucleotide sequence