Experiment: M9 with sucrose and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3957 and EX28DRAFT_3958 are separated by 460 nucleotides EX28DRAFT_3958 and EX28DRAFT_3959 are separated by 27 nucleotides EX28DRAFT_3959 and EX28DRAFT_3960 are separated by 46 nucleotides EX28DRAFT_3960 and EX28DRAFT_3961 are separated by 62 nucleotides
EX28DRAFT_3957: EX28DRAFT_3957 - hypothetical protein, at 166,703 to 167,416
_3957
EX28DRAFT_3958: EX28DRAFT_3958 - hypothetical protein, at 167,877 to 168,032
_3958
EX28DRAFT_3959: EX28DRAFT_3959 - hypothetical protein, at 168,060 to 168,242
_3959
EX28DRAFT_3960: EX28DRAFT_3960 - Acetyltransferase (GNAT) domain, at 168,289 to 168,735
_3960
EX28DRAFT_3961: EX28DRAFT_3961 - EamA-like transporter family, at 168,798 to 169,631
_3961
Position (kb) 168
169 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 167.086 kb on + strand, within EX28DRAFT_3957 at 167.087 kb on - strand, within EX28DRAFT_3957 at 167.148 kb on + strand, within EX28DRAFT_3957 at 167.166 kb on - strand, within EX28DRAFT_3957 at 167.673 kb on + strand at 167.883 kb on - strand at 167.940 kb on + strand, within EX28DRAFT_3958 at 167.940 kb on + strand, within EX28DRAFT_3958 at 168.056 kb on + strand at 168.056 kb on + strand at 168.134 kb on + strand, within EX28DRAFT_3959 at 168.157 kb on + strand, within EX28DRAFT_3959 at 168.157 kb on + strand, within EX28DRAFT_3959 at 168.158 kb on - strand, within EX28DRAFT_3959 at 168.158 kb on - strand, within EX28DRAFT_3959 at 168.158 kb on - strand, within EX28DRAFT_3959 at 168.158 kb on - strand, within EX28DRAFT_3959 at 168.222 kb on + strand, within EX28DRAFT_3959 at 168.272 kb on - strand at 168.289 kb on - strand at 168.289 kb on - strand at 168.289 kb on - strand at 168.303 kb on - strand at 168.334 kb on + strand, within EX28DRAFT_3960 at 168.334 kb on + strand, within EX28DRAFT_3960 at 168.358 kb on - strand, within EX28DRAFT_3960 at 168.423 kb on + strand, within EX28DRAFT_3960 at 168.528 kb on + strand, within EX28DRAFT_3960 at 168.541 kb on + strand, within EX28DRAFT_3960 at 168.664 kb on + strand, within EX28DRAFT_3960 at 168.681 kb on + strand, within EX28DRAFT_3960 at 168.824 kb on - strand at 168.824 kb on - strand at 168.889 kb on - strand, within EX28DRAFT_3961 at 168.937 kb on + strand, within EX28DRAFT_3961 at 168.938 kb on - strand, within EX28DRAFT_3961 at 168.938 kb on - strand, within EX28DRAFT_3961 at 169.000 kb on + strand, within EX28DRAFT_3961 at 169.000 kb on + strand, within EX28DRAFT_3961 at 169.001 kb on - strand, within EX28DRAFT_3961 at 169.011 kb on + strand, within EX28DRAFT_3961 at 169.011 kb on + strand, within EX28DRAFT_3961 at 169.011 kb on + strand, within EX28DRAFT_3961 at 169.012 kb on - strand, within EX28DRAFT_3961 at 169.035 kb on + strand, within EX28DRAFT_3961 at 169.036 kb on - strand, within EX28DRAFT_3961 at 169.036 kb on - strand, within EX28DRAFT_3961 at 169.049 kb on + strand, within EX28DRAFT_3961 at 169.205 kb on - strand, within EX28DRAFT_3961 at 169.205 kb on - strand, within EX28DRAFT_3961
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM remove 167,086 + EX28DRAFT_3957 0.54 +0.7 167,087 - EX28DRAFT_3957 0.54 +0.1 167,148 + EX28DRAFT_3957 0.62 +0.2 167,166 - EX28DRAFT_3957 0.65 +0.2 167,673 + +1.7 167,883 - +0.8 167,940 + EX28DRAFT_3958 0.40 +1.2 167,940 + EX28DRAFT_3958 0.40 -2.5 168,056 + +1.4 168,056 + +0.6 168,134 + EX28DRAFT_3959 0.40 +0.3 168,157 + EX28DRAFT_3959 0.53 +0.4 168,157 + EX28DRAFT_3959 0.53 +0.2 168,158 - EX28DRAFT_3959 0.54 +0.6 168,158 - EX28DRAFT_3959 0.54 +2.0 168,158 - EX28DRAFT_3959 0.54 +0.8 168,158 - EX28DRAFT_3959 0.54 -0.1 168,222 + EX28DRAFT_3959 0.89 -3.4 168,272 - -0.0 168,289 - +0.8 168,289 - -1.1 168,289 - +0.4 168,303 - -0.9 168,334 + EX28DRAFT_3960 0.10 +1.9 168,334 + EX28DRAFT_3960 0.10 +0.7 168,358 - EX28DRAFT_3960 0.15 +0.7 168,423 + EX28DRAFT_3960 0.30 -0.6 168,528 + EX28DRAFT_3960 0.53 -0.9 168,541 + EX28DRAFT_3960 0.56 +1.2 168,664 + EX28DRAFT_3960 0.84 -0.4 168,681 + EX28DRAFT_3960 0.88 -3.4 168,824 - -0.6 168,824 - +0.1 168,889 - EX28DRAFT_3961 0.11 +0.3 168,937 + EX28DRAFT_3961 0.17 +0.5 168,938 - EX28DRAFT_3961 0.17 -0.3 168,938 - EX28DRAFT_3961 0.17 +1.1 169,000 + EX28DRAFT_3961 0.24 -0.3 169,000 + EX28DRAFT_3961 0.24 +0.1 169,001 - EX28DRAFT_3961 0.24 +0.2 169,011 + EX28DRAFT_3961 0.26 -0.1 169,011 + EX28DRAFT_3961 0.26 +1.9 169,011 + EX28DRAFT_3961 0.26 +1.2 169,012 - EX28DRAFT_3961 0.26 -1.3 169,035 + EX28DRAFT_3961 0.28 +1.2 169,036 - EX28DRAFT_3961 0.29 +0.4 169,036 - EX28DRAFT_3961 0.29 +0.5 169,049 + EX28DRAFT_3961 0.30 +0.0 169,205 - EX28DRAFT_3961 0.49 -0.2 169,205 - EX28DRAFT_3961 0.49 +0.3
Or see this region's nucleotide sequence