Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3916

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3915 and EX28DRAFT_3916 are separated by 706 nucleotidesEX28DRAFT_3916 and EX28DRAFT_3917 are separated by 53 nucleotidesEX28DRAFT_3917 and EX28DRAFT_3918 are separated by 53 nucleotides EX28DRAFT_3915: EX28DRAFT_3915 - DNA-binding winged-HTH domains, at 124,736 to 125,497 _3915 EX28DRAFT_3916: EX28DRAFT_3916 - Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 126,204 to 126,806 _3916 EX28DRAFT_3917: EX28DRAFT_3917 - P pilus assembly protein, pilin FimA, at 126,860 to 127,444 _3917 EX28DRAFT_3918: EX28DRAFT_3918 - P pilus assembly protein, chaperone PapD, at 127,498 to 128,175 _3918 Position (kb) 126 127Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 125.263 kb on + strand, within EX28DRAFT_3915at 125.269 kb on + strand, within EX28DRAFT_3915at 125.281 kb on - strand, within EX28DRAFT_3915at 125.281 kb on - strand, within EX28DRAFT_3915at 125.284 kb on + strand, within EX28DRAFT_3915at 125.285 kb on - strand, within EX28DRAFT_3915at 125.285 kb on - strand, within EX28DRAFT_3915at 125.285 kb on - strand, within EX28DRAFT_3915at 125.350 kb on + strand, within EX28DRAFT_3915at 125.366 kb on + strand, within EX28DRAFT_3915at 125.367 kb on - strand, within EX28DRAFT_3915at 125.370 kb on - strand, within EX28DRAFT_3915at 125.476 kb on + strandat 125.477 kb on - strandat 125.479 kb on + strandat 125.485 kb on - strandat 125.491 kb on + strandat 125.497 kb on + strandat 125.507 kb on + strandat 125.512 kb on - strandat 125.587 kb on + strandat 125.613 kb on + strandat 125.614 kb on - strandat 125.951 kb on - strandat 125.953 kb on + strandat 126.102 kb on + strandat 126.104 kb on + strandat 126.690 kb on + strand, within EX28DRAFT_3916at 126.690 kb on + strand, within EX28DRAFT_3916at 126.805 kb on - strandat 126.837 kb on - strandat 126.880 kb on + strandat 126.880 kb on + strandat 127.031 kb on - strand, within EX28DRAFT_3917at 127.213 kb on + strand, within EX28DRAFT_3917at 127.214 kb on - strand, within EX28DRAFT_3917at 127.214 kb on - strand, within EX28DRAFT_3917at 127.216 kb on + strand, within EX28DRAFT_3917at 127.217 kb on - strand, within EX28DRAFT_3917at 127.217 kb on - strand, within EX28DRAFT_3917at 127.277 kb on + strand, within EX28DRAFT_3917at 127.337 kb on - strand, within EX28DRAFT_3917at 127.371 kb on - strand, within EX28DRAFT_3917at 127.371 kb on - strand, within EX28DRAFT_3917at 127.424 kb on + strandat 127.425 kb on - strandat 127.436 kb on + strandat 127.437 kb on - strandat 127.443 kb on - strandat 127.478 kb on + strandat 127.497 kb on + strandat 127.498 kb on - strandat 127.498 kb on - strandat 127.536 kb on - strandat 127.724 kb on - strand, within EX28DRAFT_3918at 127.804 kb on + strand, within EX28DRAFT_3918

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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125,263 + EX28DRAFT_3915 0.69 +0.1
125,269 + EX28DRAFT_3915 0.70 +0.1
125,281 - EX28DRAFT_3915 0.72 +0.4
125,281 - EX28DRAFT_3915 0.72 +0.7
125,284 + EX28DRAFT_3915 0.72 -1.7
125,285 - EX28DRAFT_3915 0.72 -0.1
125,285 - EX28DRAFT_3915 0.72 -0.4
125,285 - EX28DRAFT_3915 0.72 +0.5
125,350 + EX28DRAFT_3915 0.81 +1.1
125,366 + EX28DRAFT_3915 0.83 -1.0
125,367 - EX28DRAFT_3915 0.83 -1.1
125,370 - EX28DRAFT_3915 0.83 +0.5
125,476 + +0.5
125,477 - -0.2
125,479 + -0.6
125,485 - -0.1
125,491 + -3.9
125,497 + -0.4
125,507 + -0.9
125,512 - +0.2
125,587 + -2.2
125,613 + -0.1
125,614 - -1.1
125,951 - +0.3
125,953 + -0.4
126,102 + +1.0
126,104 + -0.5
126,690 + EX28DRAFT_3916 0.81 -0.4
126,690 + EX28DRAFT_3916 0.81 -2.0
126,805 - +0.6
126,837 - -2.1
126,880 + -2.8
126,880 + +0.8
127,031 - EX28DRAFT_3917 0.29 +1.9
127,213 + EX28DRAFT_3917 0.60 +0.2
127,214 - EX28DRAFT_3917 0.61 -2.3
127,214 - EX28DRAFT_3917 0.61 +0.3
127,216 + EX28DRAFT_3917 0.61 +0.9
127,217 - EX28DRAFT_3917 0.61 +0.2
127,217 - EX28DRAFT_3917 0.61 -0.7
127,277 + EX28DRAFT_3917 0.71 +0.4
127,337 - EX28DRAFT_3917 0.82 +2.1
127,371 - EX28DRAFT_3917 0.87 +0.6
127,371 - EX28DRAFT_3917 0.87 +1.4
127,424 + -1.0
127,425 - -0.9
127,436 + +0.1
127,437 - -1.6
127,443 - +0.7
127,478 + -0.1
127,497 + +0.3
127,498 - +0.6
127,498 - -0.9
127,536 - +0.5
127,724 - EX28DRAFT_3918 0.33 +0.4
127,804 + EX28DRAFT_3918 0.45 +1.2

Or see this region's nucleotide sequence