Experiment: M9 with sucrose and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3915 and EX28DRAFT_3916 are separated by 706 nucleotides EX28DRAFT_3916 and EX28DRAFT_3917 are separated by 53 nucleotides EX28DRAFT_3917 and EX28DRAFT_3918 are separated by 53 nucleotides
EX28DRAFT_3915: EX28DRAFT_3915 - DNA-binding winged-HTH domains, at 124,736 to 125,497
_3915
EX28DRAFT_3916: EX28DRAFT_3916 - Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 126,204 to 126,806
_3916
EX28DRAFT_3917: EX28DRAFT_3917 - P pilus assembly protein, pilin FimA, at 126,860 to 127,444
_3917
EX28DRAFT_3918: EX28DRAFT_3918 - P pilus assembly protein, chaperone PapD, at 127,498 to 128,175
_3918
Position (kb) 126
127 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 125.263 kb on + strand, within EX28DRAFT_3915 at 125.269 kb on + strand, within EX28DRAFT_3915 at 125.281 kb on - strand, within EX28DRAFT_3915 at 125.281 kb on - strand, within EX28DRAFT_3915 at 125.284 kb on + strand, within EX28DRAFT_3915 at 125.285 kb on - strand, within EX28DRAFT_3915 at 125.285 kb on - strand, within EX28DRAFT_3915 at 125.285 kb on - strand, within EX28DRAFT_3915 at 125.350 kb on + strand, within EX28DRAFT_3915 at 125.366 kb on + strand, within EX28DRAFT_3915 at 125.367 kb on - strand, within EX28DRAFT_3915 at 125.370 kb on - strand, within EX28DRAFT_3915 at 125.476 kb on + strand at 125.477 kb on - strand at 125.479 kb on + strand at 125.485 kb on - strand at 125.491 kb on + strand at 125.497 kb on + strand at 125.507 kb on + strand at 125.512 kb on - strand at 125.587 kb on + strand at 125.613 kb on + strand at 125.614 kb on - strand at 125.951 kb on - strand at 125.953 kb on + strand at 126.102 kb on + strand at 126.104 kb on + strand at 126.690 kb on + strand, within EX28DRAFT_3916 at 126.690 kb on + strand, within EX28DRAFT_3916 at 126.805 kb on - strand at 126.837 kb on - strand at 126.880 kb on + strand at 126.880 kb on + strand at 127.031 kb on - strand, within EX28DRAFT_3917 at 127.213 kb on + strand, within EX28DRAFT_3917 at 127.214 kb on - strand, within EX28DRAFT_3917 at 127.214 kb on - strand, within EX28DRAFT_3917 at 127.216 kb on + strand, within EX28DRAFT_3917 at 127.217 kb on - strand, within EX28DRAFT_3917 at 127.217 kb on - strand, within EX28DRAFT_3917 at 127.277 kb on + strand, within EX28DRAFT_3917 at 127.337 kb on - strand, within EX28DRAFT_3917 at 127.371 kb on - strand, within EX28DRAFT_3917 at 127.371 kb on - strand, within EX28DRAFT_3917 at 127.424 kb on + strand at 127.425 kb on - strand at 127.436 kb on + strand at 127.437 kb on - strand at 127.443 kb on - strand at 127.478 kb on + strand at 127.497 kb on + strand at 127.498 kb on - strand at 127.498 kb on - strand at 127.536 kb on - strand at 127.724 kb on - strand, within EX28DRAFT_3918 at 127.804 kb on + strand, within EX28DRAFT_3918
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM remove 125,263 + EX28DRAFT_3915 0.69 +0.1 125,269 + EX28DRAFT_3915 0.70 +0.1 125,281 - EX28DRAFT_3915 0.72 +0.4 125,281 - EX28DRAFT_3915 0.72 +0.7 125,284 + EX28DRAFT_3915 0.72 -1.7 125,285 - EX28DRAFT_3915 0.72 -0.1 125,285 - EX28DRAFT_3915 0.72 -0.4 125,285 - EX28DRAFT_3915 0.72 +0.5 125,350 + EX28DRAFT_3915 0.81 +1.1 125,366 + EX28DRAFT_3915 0.83 -1.0 125,367 - EX28DRAFT_3915 0.83 -1.1 125,370 - EX28DRAFT_3915 0.83 +0.5 125,476 + +0.5 125,477 - -0.2 125,479 + -0.6 125,485 - -0.1 125,491 + -3.9 125,497 + -0.4 125,507 + -0.9 125,512 - +0.2 125,587 + -2.2 125,613 + -0.1 125,614 - -1.1 125,951 - +0.3 125,953 + -0.4 126,102 + +1.0 126,104 + -0.5 126,690 + EX28DRAFT_3916 0.81 -0.4 126,690 + EX28DRAFT_3916 0.81 -2.0 126,805 - +0.6 126,837 - -2.1 126,880 + -2.8 126,880 + +0.8 127,031 - EX28DRAFT_3917 0.29 +1.9 127,213 + EX28DRAFT_3917 0.60 +0.2 127,214 - EX28DRAFT_3917 0.61 -2.3 127,214 - EX28DRAFT_3917 0.61 +0.3 127,216 + EX28DRAFT_3917 0.61 +0.9 127,217 - EX28DRAFT_3917 0.61 +0.2 127,217 - EX28DRAFT_3917 0.61 -0.7 127,277 + EX28DRAFT_3917 0.71 +0.4 127,337 - EX28DRAFT_3917 0.82 +2.1 127,371 - EX28DRAFT_3917 0.87 +0.6 127,371 - EX28DRAFT_3917 0.87 +1.4 127,424 + -1.0 127,425 - -0.9 127,436 + +0.1 127,437 - -1.6 127,443 - +0.7 127,478 + -0.1 127,497 + +0.3 127,498 - +0.6 127,498 - -0.9 127,536 - +0.5 127,724 - EX28DRAFT_3918 0.33 +0.4 127,804 + EX28DRAFT_3918 0.45 +1.2
Or see this region's nucleotide sequence