Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3835

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3834 and EX28DRAFT_3835 are separated by 39 nucleotidesEX28DRAFT_3835 and EX28DRAFT_3836 are separated by 314 nucleotides EX28DRAFT_3834: EX28DRAFT_3834 - Transcriptional regulators, at 39,842 to 41,020 _3834 EX28DRAFT_3835: EX28DRAFT_3835 - Uncharacterized FlgJ-related protein, at 41,060 to 41,884 _3835 EX28DRAFT_3836: EX28DRAFT_3836 - Glycosidases, at 42,199 to 44,229 _3836 Position (kb) 41 42Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 40.133 kb on + strand, within EX28DRAFT_3834at 40.133 kb on + strand, within EX28DRAFT_3834at 40.133 kb on + strand, within EX28DRAFT_3834at 40.133 kb on + strand, within EX28DRAFT_3834at 40.134 kb on - strand, within EX28DRAFT_3834at 40.135 kb on + strand, within EX28DRAFT_3834at 40.136 kb on - strand, within EX28DRAFT_3834at 40.183 kb on - strand, within EX28DRAFT_3834at 40.402 kb on + strand, within EX28DRAFT_3834at 40.455 kb on + strand, within EX28DRAFT_3834at 40.455 kb on + strand, within EX28DRAFT_3834at 40.718 kb on + strand, within EX28DRAFT_3834at 40.720 kb on + strand, within EX28DRAFT_3834at 40.747 kb on + strand, within EX28DRAFT_3834at 40.747 kb on + strand, within EX28DRAFT_3834at 40.940 kb on + strandat 40.940 kb on + strandat 40.941 kb on - strandat 41.062 kb on - strandat 41.062 kb on - strandat 41.062 kb on - strandat 41.062 kb on - strandat 41.062 kb on - strandat 41.065 kb on + strandat 41.066 kb on - strandat 41.066 kb on - strandat 41.098 kb on - strandat 41.098 kb on - strandat 41.098 kb on - strandat 41.112 kb on + strandat 41.113 kb on - strandat 41.113 kb on - strandat 41.113 kb on - strandat 41.113 kb on - strandat 41.119 kb on + strandat 41.120 kb on - strandat 41.121 kb on + strandat 41.121 kb on + strandat 41.122 kb on - strandat 41.122 kb on - strandat 41.122 kb on - strandat 41.122 kb on - strandat 41.122 kb on - strandat 41.122 kb on - strandat 41.167 kb on + strand, within EX28DRAFT_3835at 41.253 kb on - strand, within EX28DRAFT_3835at 41.324 kb on - strand, within EX28DRAFT_3835at 41.324 kb on - strand, within EX28DRAFT_3835at 41.326 kb on + strand, within EX28DRAFT_3835at 41.326 kb on + strand, within EX28DRAFT_3835at 41.327 kb on - strand, within EX28DRAFT_3835at 41.327 kb on - strand, within EX28DRAFT_3835at 41.371 kb on + strand, within EX28DRAFT_3835at 41.384 kb on - strand, within EX28DRAFT_3835at 41.508 kb on + strand, within EX28DRAFT_3835at 41.521 kb on + strand, within EX28DRAFT_3835at 41.566 kb on - strand, within EX28DRAFT_3835at 41.625 kb on + strand, within EX28DRAFT_3835at 41.724 kb on + strand, within EX28DRAFT_3835at 41.725 kb on - strand, within EX28DRAFT_3835at 41.746 kb on + strand, within EX28DRAFT_3835at 41.749 kb on + strand, within EX28DRAFT_3835at 41.749 kb on + strand, within EX28DRAFT_3835at 41.749 kb on + strand, within EX28DRAFT_3835at 41.750 kb on - strand, within EX28DRAFT_3835at 41.750 kb on - strand, within EX28DRAFT_3835at 41.766 kb on - strand, within EX28DRAFT_3835at 41.780 kb on - strand, within EX28DRAFT_3835at 41.789 kb on - strand, within EX28DRAFT_3835at 41.837 kb on + strandat 41.885 kb on + strandat 41.886 kb on - strandat 41.905 kb on - strandat 41.969 kb on - strandat 41.985 kb on + strandat 41.987 kb on + strandat 42.634 kb on + strand, within EX28DRAFT_3836at 42.634 kb on + strand, within EX28DRAFT_3836at 42.634 kb on + strand, within EX28DRAFT_3836at 42.638 kb on - strand, within EX28DRAFT_3836at 42.751 kb on - strand, within EX28DRAFT_3836at 42.793 kb on + strand, within EX28DRAFT_3836at 42.827 kb on - strand, within EX28DRAFT_3836

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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40,133 + EX28DRAFT_3834 0.25 +1.2
40,133 + EX28DRAFT_3834 0.25 +0.4
40,133 + EX28DRAFT_3834 0.25 +0.4
40,133 + EX28DRAFT_3834 0.25 +2.9
40,134 - EX28DRAFT_3834 0.25 +0.6
40,135 + EX28DRAFT_3834 0.25 -0.7
40,136 - EX28DRAFT_3834 0.25 -3.7
40,183 - EX28DRAFT_3834 0.29 -1.0
40,402 + EX28DRAFT_3834 0.47 +0.1
40,455 + EX28DRAFT_3834 0.52 -0.3
40,455 + EX28DRAFT_3834 0.52 -2.1
40,718 + EX28DRAFT_3834 0.74 +0.9
40,720 + EX28DRAFT_3834 0.74 -2.5
40,747 + EX28DRAFT_3834 0.77 +0.6
40,747 + EX28DRAFT_3834 0.77 -0.3
40,940 + -1.6
40,940 + +1.2
40,941 - +0.6
41,062 - -0.6
41,062 - -0.2
41,062 - -3.9
41,062 - +0.4
41,062 - +0.3
41,065 + +0.4
41,066 - -0.7
41,066 - -3.1
41,098 - +0.9
41,098 - +0.1
41,098 - -1.0
41,112 + -0.1
41,113 - -0.3
41,113 - +1.0
41,113 - +0.4
41,113 - +0.9
41,119 + -2.3
41,120 - +0.5
41,121 + -0.1
41,121 + +0.5
41,122 - +0.6
41,122 - +0.2
41,122 - -0.3
41,122 - +0.4
41,122 - +1.1
41,122 - +1.0
41,167 + EX28DRAFT_3835 0.13 +0.0
41,253 - EX28DRAFT_3835 0.23 -0.6
41,324 - EX28DRAFT_3835 0.32 +0.1
41,324 - EX28DRAFT_3835 0.32 +0.1
41,326 + EX28DRAFT_3835 0.32 +0.1
41,326 + EX28DRAFT_3835 0.32 +0.9
41,327 - EX28DRAFT_3835 0.32 -1.1
41,327 - EX28DRAFT_3835 0.32 +0.1
41,371 + EX28DRAFT_3835 0.38 -0.1
41,384 - EX28DRAFT_3835 0.39 -0.3
41,508 + EX28DRAFT_3835 0.54 +3.6
41,521 + EX28DRAFT_3835 0.56 -0.5
41,566 - EX28DRAFT_3835 0.61 +0.2
41,625 + EX28DRAFT_3835 0.68 -0.7
41,724 + EX28DRAFT_3835 0.80 +0.3
41,725 - EX28DRAFT_3835 0.81 -1.5
41,746 + EX28DRAFT_3835 0.83 -0.0
41,749 + EX28DRAFT_3835 0.84 +0.7
41,749 + EX28DRAFT_3835 0.84 -0.3
41,749 + EX28DRAFT_3835 0.84 -0.0
41,750 - EX28DRAFT_3835 0.84 -0.7
41,750 - EX28DRAFT_3835 0.84 -2.5
41,766 - EX28DRAFT_3835 0.86 +0.3
41,780 - EX28DRAFT_3835 0.87 +0.0
41,789 - EX28DRAFT_3835 0.88 +0.4
41,837 + -0.3
41,885 + +0.6
41,886 - +0.0
41,905 - -2.1
41,969 - +0.3
41,985 + +1.2
41,987 + -0.3
42,634 + EX28DRAFT_3836 0.21 -3.0
42,634 + EX28DRAFT_3836 0.21 -0.5
42,634 + EX28DRAFT_3836 0.21 +0.7
42,638 - EX28DRAFT_3836 0.22 +1.1
42,751 - EX28DRAFT_3836 0.27 +1.1
42,793 + EX28DRAFT_3836 0.29 +0.2
42,827 - EX28DRAFT_3836 0.31 +0.2

Or see this region's nucleotide sequence