Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3832

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3831 and EX28DRAFT_3832 are separated by 72 nucleotidesEX28DRAFT_3832 and EX28DRAFT_3833 overlap by 23 nucleotides EX28DRAFT_3831: EX28DRAFT_3831 - D-xylose ABC transporter, substrate-binding protein, at 36,043 to 37,035 _3831 EX28DRAFT_3832: EX28DRAFT_3832 - D-xylose ABC transporter, ATP-binding protein, at 37,108 to 38,649 _3832 EX28DRAFT_3833: EX28DRAFT_3833 - ABC-type xylose transport system, permease component, at 38,627 to 39,808 _3833 Position (kb) 37 38 39Strain fitness (log2 ratio) -2 -1 0 1 2at 36.310 kb on + strand, within EX28DRAFT_3831at 36.311 kb on - strand, within EX28DRAFT_3831at 36.324 kb on - strand, within EX28DRAFT_3831at 36.326 kb on + strand, within EX28DRAFT_3831at 36.327 kb on - strand, within EX28DRAFT_3831at 36.327 kb on - strand, within EX28DRAFT_3831at 36.409 kb on + strand, within EX28DRAFT_3831at 36.446 kb on + strand, within EX28DRAFT_3831at 36.487 kb on + strand, within EX28DRAFT_3831at 36.487 kb on + strand, within EX28DRAFT_3831at 36.512 kb on + strand, within EX28DRAFT_3831at 36.516 kb on + strand, within EX28DRAFT_3831at 36.516 kb on + strand, within EX28DRAFT_3831at 36.586 kb on - strand, within EX28DRAFT_3831at 36.763 kb on - strand, within EX28DRAFT_3831at 36.879 kb on - strand, within EX28DRAFT_3831at 36.879 kb on - strand, within EX28DRAFT_3831at 36.903 kb on + strand, within EX28DRAFT_3831at 36.903 kb on + strand, within EX28DRAFT_3831at 36.903 kb on + strand, within EX28DRAFT_3831at 36.904 kb on - strand, within EX28DRAFT_3831at 37.075 kb on + strandat 37.075 kb on + strandat 37.076 kb on - strandat 37.076 kb on - strandat 37.076 kb on - strandat 37.094 kb on + strandat 37.094 kb on + strandat 37.095 kb on - strandat 37.095 kb on - strandat 37.107 kb on + strandat 37.118 kb on + strandat 37.118 kb on + strandat 37.119 kb on - strandat 37.267 kb on + strand, within EX28DRAFT_3832at 37.267 kb on + strand, within EX28DRAFT_3832at 37.282 kb on + strand, within EX28DRAFT_3832at 37.454 kb on - strand, within EX28DRAFT_3832at 37.566 kb on - strand, within EX28DRAFT_3832at 37.581 kb on + strand, within EX28DRAFT_3832at 37.657 kb on - strand, within EX28DRAFT_3832at 37.692 kb on + strand, within EX28DRAFT_3832at 37.693 kb on - strand, within EX28DRAFT_3832at 37.697 kb on - strand, within EX28DRAFT_3832at 37.697 kb on - strand, within EX28DRAFT_3832at 37.836 kb on - strand, within EX28DRAFT_3832at 38.018 kb on + strand, within EX28DRAFT_3832at 38.018 kb on + strand, within EX28DRAFT_3832at 38.019 kb on - strand, within EX28DRAFT_3832at 38.065 kb on + strand, within EX28DRAFT_3832at 38.384 kb on + strand, within EX28DRAFT_3832at 38.384 kb on + strand, within EX28DRAFT_3832at 38.385 kb on - strand, within EX28DRAFT_3832at 38.385 kb on - strand, within EX28DRAFT_3832at 38.387 kb on + strand, within EX28DRAFT_3832at 38.431 kb on + strand, within EX28DRAFT_3832at 38.612 kb on + strandat 38.778 kb on - strand, within EX28DRAFT_3833at 38.781 kb on + strand, within EX28DRAFT_3833at 38.782 kb on - strand, within EX28DRAFT_3833at 39.164 kb on - strand, within EX28DRAFT_3833at 39.164 kb on - strand, within EX28DRAFT_3833at 39.175 kb on + strand, within EX28DRAFT_3833at 39.330 kb on + strand, within EX28DRAFT_3833at 39.379 kb on - strand, within EX28DRAFT_3833at 39.397 kb on + strand, within EX28DRAFT_3833at 39.427 kb on + strand, within EX28DRAFT_3833at 39.431 kb on + strand, within EX28DRAFT_3833at 39.431 kb on + strand, within EX28DRAFT_3833at 39.431 kb on + strand, within EX28DRAFT_3833

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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36,310 + EX28DRAFT_3831 0.27 -0.1
36,311 - EX28DRAFT_3831 0.27 -0.4
36,324 - EX28DRAFT_3831 0.28 +1.7
36,326 + EX28DRAFT_3831 0.28 -2.3
36,327 - EX28DRAFT_3831 0.29 -1.1
36,327 - EX28DRAFT_3831 0.29 +1.1
36,409 + EX28DRAFT_3831 0.37 +0.7
36,446 + EX28DRAFT_3831 0.41 -1.0
36,487 + EX28DRAFT_3831 0.45 -0.6
36,487 + EX28DRAFT_3831 0.45 +1.0
36,512 + EX28DRAFT_3831 0.47 -0.2
36,516 + EX28DRAFT_3831 0.48 +1.0
36,516 + EX28DRAFT_3831 0.48 +1.9
36,586 - EX28DRAFT_3831 0.55 -0.3
36,763 - EX28DRAFT_3831 0.73 +0.1
36,879 - EX28DRAFT_3831 0.84 -0.1
36,879 - EX28DRAFT_3831 0.84 -0.9
36,903 + EX28DRAFT_3831 0.87 +0.2
36,903 + EX28DRAFT_3831 0.87 +0.4
36,903 + EX28DRAFT_3831 0.87 +0.4
36,904 - EX28DRAFT_3831 0.87 +0.1
37,075 + +1.0
37,075 + +0.2
37,076 - -0.3
37,076 - -1.8
37,076 - -2.1
37,094 + +0.3
37,094 + +0.2
37,095 - -0.5
37,095 - +1.4
37,107 + -0.1
37,118 + -0.0
37,118 + -0.8
37,119 - -2.1
37,267 + EX28DRAFT_3832 0.10 -0.4
37,267 + EX28DRAFT_3832 0.10 -0.2
37,282 + EX28DRAFT_3832 0.11 -0.0
37,454 - EX28DRAFT_3832 0.22 -0.2
37,566 - EX28DRAFT_3832 0.30 +0.2
37,581 + EX28DRAFT_3832 0.31 +1.2
37,657 - EX28DRAFT_3832 0.36 +0.6
37,692 + EX28DRAFT_3832 0.38 +1.1
37,693 - EX28DRAFT_3832 0.38 -0.2
37,697 - EX28DRAFT_3832 0.38 -0.7
37,697 - EX28DRAFT_3832 0.38 -0.1
37,836 - EX28DRAFT_3832 0.47 +0.7
38,018 + EX28DRAFT_3832 0.59 +0.2
38,018 + EX28DRAFT_3832 0.59 -0.5
38,019 - EX28DRAFT_3832 0.59 +0.3
38,065 + EX28DRAFT_3832 0.62 -1.3
38,384 + EX28DRAFT_3832 0.83 +1.9
38,384 + EX28DRAFT_3832 0.83 -0.6
38,385 - EX28DRAFT_3832 0.83 +0.4
38,385 - EX28DRAFT_3832 0.83 -0.0
38,387 + EX28DRAFT_3832 0.83 -1.3
38,431 + EX28DRAFT_3832 0.86 -0.7
38,612 + -2.6
38,778 - EX28DRAFT_3833 0.13 -0.7
38,781 + EX28DRAFT_3833 0.13 -0.6
38,782 - EX28DRAFT_3833 0.13 +0.6
39,164 - EX28DRAFT_3833 0.45 -0.5
39,164 - EX28DRAFT_3833 0.45 -2.6
39,175 + EX28DRAFT_3833 0.46 +0.5
39,330 + EX28DRAFT_3833 0.59 -0.5
39,379 - EX28DRAFT_3833 0.64 -0.0
39,397 + EX28DRAFT_3833 0.65 -0.1
39,427 + EX28DRAFT_3833 0.68 +0.2
39,431 + EX28DRAFT_3833 0.68 -2.0
39,431 + EX28DRAFT_3833 0.68 +1.2
39,431 + EX28DRAFT_3833 0.68 +0.2

Or see this region's nucleotide sequence