Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3698

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3696 and EX28DRAFT_3697 overlap by 1 nucleotidesEX28DRAFT_3697 and EX28DRAFT_3698 are separated by 228 nucleotidesEX28DRAFT_3698 and EX28DRAFT_3699 are separated by 41 nucleotides EX28DRAFT_3696: EX28DRAFT_3696 - Uncharacterized protein conserved in bacteria, at 366,658 to 367,401 _3696 EX28DRAFT_3697: EX28DRAFT_3697 - dephospho-CoA kinase, at 367,401 to 368,021 _3697 EX28DRAFT_3698: EX28DRAFT_3698 - guanosine monophosphate reductase, eukaryotic, at 368,250 to 369,293 _3698 EX28DRAFT_3699: EX28DRAFT_3699 - Type II secretory pathway, component PulF, at 369,335 to 370,519 _3699 Position (kb) 368 369 370Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 367.329 kb on + strandat 367.329 kb on + strandat 368.013 kb on - strandat 368.049 kb on - strandat 368.052 kb on - strandat 368.074 kb on + strandat 368.138 kb on + strandat 368.178 kb on + strandat 368.182 kb on - strandat 368.189 kb on - strandat 368.189 kb on - strandat 368.189 kb on - strandat 368.216 kb on + strandat 368.217 kb on - strandat 368.221 kb on + strandat 368.222 kb on - strandat 368.275 kb on + strandat 368.275 kb on + strandat 368.275 kb on + strandat 368.275 kb on + strandat 368.313 kb on - strandat 368.414 kb on + strand, within EX28DRAFT_3698at 368.485 kb on - strand, within EX28DRAFT_3698at 369.038 kb on + strand, within EX28DRAFT_3698at 369.201 kb on + strandat 369.201 kb on + strandat 369.201 kb on + strandat 369.201 kb on + strandat 369.202 kb on - strandat 369.202 kb on - strandat 369.202 kb on - strandat 369.249 kb on - strandat 369.249 kb on - strandat 369.378 kb on + strandat 369.378 kb on + strandat 369.379 kb on - strandat 369.876 kb on + strand, within EX28DRAFT_3699at 369.877 kb on - strand, within EX28DRAFT_3699at 369.877 kb on - strand, within EX28DRAFT_3699at 369.887 kb on - strand, within EX28DRAFT_3699at 369.887 kb on - strand, within EX28DRAFT_3699at 369.948 kb on + strand, within EX28DRAFT_3699

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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367,329 + +1.8
367,329 + -1.4
368,013 - +2.3
368,049 - -0.2
368,052 - -1.7
368,074 + -0.1
368,138 + +0.4
368,178 + -0.5
368,182 - -1.5
368,189 - +1.0
368,189 - -2.3
368,189 - -1.5
368,216 + +0.2
368,217 - -1.3
368,221 + -1.1
368,222 - +0.2
368,275 + +0.3
368,275 + -1.4
368,275 + +0.2
368,275 + -0.5
368,313 - -0.5
368,414 + EX28DRAFT_3698 0.16 +2.1
368,485 - EX28DRAFT_3698 0.23 +0.6
369,038 + EX28DRAFT_3698 0.75 +0.7
369,201 + -2.9
369,201 + -1.1
369,201 + +0.8
369,201 + -0.5
369,202 - +0.3
369,202 - -1.2
369,202 - +0.0
369,249 - -1.8
369,249 - -2.4
369,378 + -4.0
369,378 + -1.8
369,379 - +0.2
369,876 + EX28DRAFT_3699 0.46 +1.0
369,877 - EX28DRAFT_3699 0.46 +2.5
369,877 - EX28DRAFT_3699 0.46 -1.3
369,887 - EX28DRAFT_3699 0.47 +0.0
369,887 - EX28DRAFT_3699 0.47 -0.8
369,948 + EX28DRAFT_3699 0.52 -0.5

Or see this region's nucleotide sequence