Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3659

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_3657 and EX28DRAFT_3658 are separated by 44 nucleotidesEX28DRAFT_3658 and EX28DRAFT_3659 overlap by 17 nucleotidesEX28DRAFT_3659 and EX28DRAFT_3660 overlap by 25 nucleotides EX28DRAFT_3657: EX28DRAFT_3657 - Uncharacterized membrane-associated protein, at 324,557 to 325,324 _3657 EX28DRAFT_3658: EX28DRAFT_3658 - thiamine ABC transporter, ATP-binding protein, at 325,369 to 326,070 _3658 EX28DRAFT_3659: EX28DRAFT_3659 - thiamine ABC transporter, permease protein, at 326,054 to 327,664 _3659 EX28DRAFT_3660: EX28DRAFT_3660 - thiamine ABC transporter, periplasmic binding protein, at 327,640 to 328,623 _3660 Position (kb) 326 327 328Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 325.088 kb on - strand, within EX28DRAFT_3657at 325.190 kb on + strand, within EX28DRAFT_3657at 325.191 kb on - strand, within EX28DRAFT_3657at 325.503 kb on + strand, within EX28DRAFT_3658at 325.864 kb on - strand, within EX28DRAFT_3658at 325.944 kb on + strand, within EX28DRAFT_3658at 325.945 kb on - strand, within EX28DRAFT_3658at 325.945 kb on - strand, within EX28DRAFT_3658at 326.098 kb on + strandat 326.102 kb on + strandat 326.187 kb on + strandat 326.489 kb on + strand, within EX28DRAFT_3659at 326.870 kb on - strand, within EX28DRAFT_3659at 326.953 kb on - strand, within EX28DRAFT_3659at 326.974 kb on - strand, within EX28DRAFT_3659at 327.052 kb on + strand, within EX28DRAFT_3659at 327.215 kb on - strand, within EX28DRAFT_3659at 327.341 kb on + strand, within EX28DRAFT_3659at 327.627 kb on - strandat 327.670 kb on + strandat 327.671 kb on - strandat 327.769 kb on - strand, within EX28DRAFT_3660at 327.769 kb on - strand, within EX28DRAFT_3660at 327.779 kb on + strand, within EX28DRAFT_3660at 327.903 kb on - strand, within EX28DRAFT_3660at 327.932 kb on + strand, within EX28DRAFT_3660at 327.932 kb on + strand, within EX28DRAFT_3660at 327.933 kb on - strand, within EX28DRAFT_3660at 327.933 kb on - strand, within EX28DRAFT_3660at 327.933 kb on - strand, within EX28DRAFT_3660at 327.933 kb on - strand, within EX28DRAFT_3660at 327.933 kb on - strand, within EX28DRAFT_3660at 327.933 kb on - strand, within EX28DRAFT_3660at 327.933 kb on - strand, within EX28DRAFT_3660at 327.933 kb on - strand, within EX28DRAFT_3660at 327.933 kb on - strand, within EX28DRAFT_3660at 327.936 kb on + strand, within EX28DRAFT_3660at 327.936 kb on + strand, within EX28DRAFT_3660at 327.937 kb on - strand, within EX28DRAFT_3660at 327.937 kb on - strand, within EX28DRAFT_3660at 327.937 kb on - strand, within EX28DRAFT_3660at 327.978 kb on + strand, within EX28DRAFT_3660at 327.978 kb on + strand, within EX28DRAFT_3660at 327.979 kb on - strand, within EX28DRAFT_3660at 327.981 kb on - strand, within EX28DRAFT_3660at 327.981 kb on - strand, within EX28DRAFT_3660at 327.981 kb on - strand, within EX28DRAFT_3660at 328.238 kb on + strand, within EX28DRAFT_3660at 328.253 kb on + strand, within EX28DRAFT_3660at 328.545 kb on - strandat 328.545 kb on - strandat 328.550 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
remove
325,088 - EX28DRAFT_3657 0.69 +1.5
325,190 + EX28DRAFT_3657 0.82 +0.6
325,191 - EX28DRAFT_3657 0.83 -0.6
325,503 + EX28DRAFT_3658 0.19 -0.2
325,864 - EX28DRAFT_3658 0.71 +0.1
325,944 + EX28DRAFT_3658 0.82 +0.7
325,945 - EX28DRAFT_3658 0.82 +0.5
325,945 - EX28DRAFT_3658 0.82 -2.1
326,098 + +1.4
326,102 + +0.2
326,187 + -0.7
326,489 + EX28DRAFT_3659 0.27 -0.2
326,870 - EX28DRAFT_3659 0.51 -4.2
326,953 - EX28DRAFT_3659 0.56 -0.2
326,974 - EX28DRAFT_3659 0.57 -0.5
327,052 + EX28DRAFT_3659 0.62 +0.5
327,215 - EX28DRAFT_3659 0.72 -2.2
327,341 + EX28DRAFT_3659 0.80 -4.5
327,627 - -0.6
327,670 + -0.2
327,671 - -0.6
327,769 - EX28DRAFT_3660 0.13 +0.8
327,769 - EX28DRAFT_3660 0.13 -0.2
327,779 + EX28DRAFT_3660 0.14 +0.8
327,903 - EX28DRAFT_3660 0.27 -0.8
327,932 + EX28DRAFT_3660 0.30 -0.3
327,932 + EX28DRAFT_3660 0.30 -0.5
327,933 - EX28DRAFT_3660 0.30 +0.0
327,933 - EX28DRAFT_3660 0.30 +1.5
327,933 - EX28DRAFT_3660 0.30 +0.9
327,933 - EX28DRAFT_3660 0.30 -0.0
327,933 - EX28DRAFT_3660 0.30 -0.3
327,933 - EX28DRAFT_3660 0.30 +0.7
327,933 - EX28DRAFT_3660 0.30 -1.1
327,933 - EX28DRAFT_3660 0.30 +0.5
327,933 - EX28DRAFT_3660 0.30 +0.7
327,936 + EX28DRAFT_3660 0.30 -1.2
327,936 + EX28DRAFT_3660 0.30 +0.2
327,937 - EX28DRAFT_3660 0.30 -0.3
327,937 - EX28DRAFT_3660 0.30 +0.5
327,937 - EX28DRAFT_3660 0.30 +0.2
327,978 + EX28DRAFT_3660 0.34 +1.0
327,978 + EX28DRAFT_3660 0.34 -0.4
327,979 - EX28DRAFT_3660 0.34 +0.2
327,981 - EX28DRAFT_3660 0.35 -0.4
327,981 - EX28DRAFT_3660 0.35 +0.2
327,981 - EX28DRAFT_3660 0.35 -0.5
328,238 + EX28DRAFT_3660 0.61 -0.1
328,253 + EX28DRAFT_3660 0.62 -0.7
328,545 - +0.1
328,545 - +0.4
328,550 + -0.4

Or see this region's nucleotide sequence