Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3643

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3641 and EX28DRAFT_3642 are separated by 114 nucleotidesEX28DRAFT_3642 and EX28DRAFT_3643 are separated by 39 nucleotidesEX28DRAFT_3643 and EX28DRAFT_3644 are separated by 4 nucleotidesEX28DRAFT_3644 and EX28DRAFT_3645 are separated by 3 nucleotides EX28DRAFT_3641: EX28DRAFT_3641 - transporter, monovalent cation:proton antiporter-2 (CPA2) family, at 302,827 to 304,692 _3641 EX28DRAFT_3642: EX28DRAFT_3642 - Dihydrofolate reductase, at 304,807 to 305,286 _3642 EX28DRAFT_3643: EX28DRAFT_3643 - Bis(5'nucleosyl)-tetraphosphatase, ApaH, at 305,326 to 306,174 _3643 EX28DRAFT_3644: EX28DRAFT_3644 - Uncharacterized protein affecting Mg2+/Co2+ transport, at 306,179 to 306,556 _3644 EX28DRAFT_3645: EX28DRAFT_3645 - ribosomal RNA small subunit methyltransferase A, at 306,560 to 307,381 _3645 Position (kb) 305 306 307Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 304.439 kb on - strand, within EX28DRAFT_3641at 304.711 kb on - strandat 304.711 kb on - strandat 304.769 kb on + strandat 305.319 kb on + strandat 305.324 kb on + strandat 305.325 kb on - strandat 305.408 kb on - strandat 305.600 kb on - strand, within EX28DRAFT_3643at 305.877 kb on + strand, within EX28DRAFT_3643at 306.028 kb on + strand, within EX28DRAFT_3643at 306.165 kb on - strandat 306.165 kb on - strandat 306.168 kb on + strandat 306.169 kb on - strandat 306.169 kb on - strandat 306.169 kb on - strandat 306.169 kb on - strandat 306.169 kb on - strandat 306.169 kb on - strandat 306.313 kb on - strand, within EX28DRAFT_3644at 306.313 kb on - strand, within EX28DRAFT_3644at 306.318 kb on + strand, within EX28DRAFT_3644at 306.465 kb on + strand, within EX28DRAFT_3644at 306.514 kb on - strand, within EX28DRAFT_3644at 306.524 kb on + strandat 306.525 kb on - strandat 306.537 kb on - strandat 306.561 kb on + strandat 306.886 kb on - strand, within EX28DRAFT_3645at 306.886 kb on - strand, within EX28DRAFT_3645at 306.995 kb on - strand, within EX28DRAFT_3645at 306.997 kb on - strand, within EX28DRAFT_3645

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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304,439 - EX28DRAFT_3641 0.86 +0.4
304,711 - -0.3
304,711 - +0.4
304,769 + +0.7
305,319 + -4.4
305,324 + -0.7
305,325 - -0.7
305,408 - -1.4
305,600 - EX28DRAFT_3643 0.32 +0.7
305,877 + EX28DRAFT_3643 0.65 -2.7
306,028 + EX28DRAFT_3643 0.83 -0.9
306,165 - -1.5
306,165 - -3.2
306,168 + -1.5
306,169 - +0.2
306,169 - +2.7
306,169 - -0.2
306,169 - +0.3
306,169 - -0.2
306,169 - +0.5
306,313 - EX28DRAFT_3644 0.35 +0.9
306,313 - EX28DRAFT_3644 0.35 +0.3
306,318 + EX28DRAFT_3644 0.37 -1.5
306,465 + EX28DRAFT_3644 0.76 -0.3
306,514 - EX28DRAFT_3644 0.89 +0.6
306,524 + +0.1
306,525 - -3.8
306,537 - -0.1
306,561 + +0.2
306,886 - EX28DRAFT_3645 0.40 -0.3
306,886 - EX28DRAFT_3645 0.40 -0.6
306,995 - EX28DRAFT_3645 0.53 -4.5
306,997 - EX28DRAFT_3645 0.53 -0.2

Or see this region's nucleotide sequence