Experiment: M9 with sucrose and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3393 and EX28DRAFT_3394 are separated by 79 nucleotides EX28DRAFT_3394 and EX28DRAFT_3395 are separated by 75 nucleotides EX28DRAFT_3395 and EX28DRAFT_3396 are separated by 48 nucleotides
EX28DRAFT_3393: EX28DRAFT_3393 - methyl-accepting chemotaxis sensory transducer with TarH sensor, at 60,558 to 62,207
_3393
EX28DRAFT_3394: EX28DRAFT_3394 - Permeases of the drug/metabolite transporter (DMT) superfamily, at 62,287 to 63,252
_3394
EX28DRAFT_3395: EX28DRAFT_3395 - AraC-type DNA-binding domain-containing proteins, at 63,328 to 64,152
_3395
EX28DRAFT_3396: EX28DRAFT_3396 - Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 64,201 to 65,244
_3396
Position (kb) 62
63
64 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 61.292 kb on + strand, within EX28DRAFT_3393 at 61.292 kb on + strand, within EX28DRAFT_3393 at 61.293 kb on - strand, within EX28DRAFT_3393 at 61.293 kb on - strand, within EX28DRAFT_3393 at 61.293 kb on - strand, within EX28DRAFT_3393 at 61.382 kb on + strand, within EX28DRAFT_3393 at 61.389 kb on + strand, within EX28DRAFT_3393 at 61.389 kb on + strand, within EX28DRAFT_3393 at 61.604 kb on + strand, within EX28DRAFT_3393 at 61.650 kb on - strand, within EX28DRAFT_3393 at 61.682 kb on + strand, within EX28DRAFT_3393 at 61.896 kb on - strand, within EX28DRAFT_3393 at 61.975 kb on + strand, within EX28DRAFT_3393 at 61.975 kb on + strand, within EX28DRAFT_3393 at 62.148 kb on + strand at 62.148 kb on + strand at 62.149 kb on - strand at 62.205 kb on + strand at 62.206 kb on - strand at 62.418 kb on + strand, within EX28DRAFT_3394 at 62.419 kb on - strand, within EX28DRAFT_3394 at 62.419 kb on - strand, within EX28DRAFT_3394 at 62.420 kb on + strand, within EX28DRAFT_3394 at 62.421 kb on - strand, within EX28DRAFT_3394 at 62.421 kb on - strand, within EX28DRAFT_3394 at 62.421 kb on - strand, within EX28DRAFT_3394 at 62.735 kb on + strand, within EX28DRAFT_3394 at 62.736 kb on - strand, within EX28DRAFT_3394 at 62.863 kb on + strand, within EX28DRAFT_3394 at 62.864 kb on - strand, within EX28DRAFT_3394 at 62.916 kb on - strand, within EX28DRAFT_3394 at 62.916 kb on - strand, within EX28DRAFT_3394 at 62.970 kb on + strand, within EX28DRAFT_3394 at 62.970 kb on + strand, within EX28DRAFT_3394 at 63.017 kb on + strand, within EX28DRAFT_3394 at 63.018 kb on - strand, within EX28DRAFT_3394 at 63.020 kb on + strand, within EX28DRAFT_3394 at 63.021 kb on - strand, within EX28DRAFT_3394 at 63.021 kb on - strand, within EX28DRAFT_3394 at 63.021 kb on - strand, within EX28DRAFT_3394 at 63.024 kb on + strand, within EX28DRAFT_3394 at 63.025 kb on - strand, within EX28DRAFT_3394 at 63.025 kb on - strand, within EX28DRAFT_3394 at 63.160 kb on + strand at 63.233 kb on + strand at 63.233 kb on + strand at 63.233 kb on + strand at 63.234 kb on - strand at 63.234 kb on - strand at 63.234 kb on - strand at 63.235 kb on + strand at 63.235 kb on + strand at 63.235 kb on + strand at 63.235 kb on + strand at 63.235 kb on + strand at 63.236 kb on - strand at 63.236 kb on - strand at 63.236 kb on - strand at 63.236 kb on - strand at 63.246 kb on + strand at 63.269 kb on - strand at 63.269 kb on - strand at 63.272 kb on + strand at 63.272 kb on + strand at 63.272 kb on + strand at 63.273 kb on - strand at 63.288 kb on + strand at 63.288 kb on + strand at 63.289 kb on - strand at 63.289 kb on - strand at 63.314 kb on + strand at 63.367 kb on - strand at 63.397 kb on + strand at 63.397 kb on + strand at 63.603 kb on + strand, within EX28DRAFT_3395 at 63.605 kb on + strand, within EX28DRAFT_3395 at 63.605 kb on + strand, within EX28DRAFT_3395 at 63.605 kb on + strand, within EX28DRAFT_3395 at 63.606 kb on - strand, within EX28DRAFT_3395 at 63.606 kb on - strand, within EX28DRAFT_3395 at 63.606 kb on - strand, within EX28DRAFT_3395 at 63.621 kb on - strand, within EX28DRAFT_3395 at 63.712 kb on + strand, within EX28DRAFT_3395 at 63.811 kb on - strand, within EX28DRAFT_3395 at 63.863 kb on + strand, within EX28DRAFT_3395 at 63.863 kb on + strand, within EX28DRAFT_3395 at 63.863 kb on + strand, within EX28DRAFT_3395 at 63.863 kb on + strand, within EX28DRAFT_3395 at 63.934 kb on - strand, within EX28DRAFT_3395 at 64.056 kb on + strand, within EX28DRAFT_3395 at 64.057 kb on - strand, within EX28DRAFT_3395 at 64.129 kb on - strand at 64.234 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM remove 61,292 + EX28DRAFT_3393 0.44 +1.5 61,292 + EX28DRAFT_3393 0.44 -0.1 61,293 - EX28DRAFT_3393 0.45 -0.0 61,293 - EX28DRAFT_3393 0.45 +0.1 61,293 - EX28DRAFT_3393 0.45 -0.4 61,382 + EX28DRAFT_3393 0.50 +0.3 61,389 + EX28DRAFT_3393 0.50 -0.2 61,389 + EX28DRAFT_3393 0.50 -0.7 61,604 + EX28DRAFT_3393 0.63 +0.6 61,650 - EX28DRAFT_3393 0.66 +0.3 61,682 + EX28DRAFT_3393 0.68 +0.4 61,896 - EX28DRAFT_3393 0.81 -2.0 61,975 + EX28DRAFT_3393 0.86 -0.2 61,975 + EX28DRAFT_3393 0.86 -0.4 62,148 + -0.1 62,148 + -0.1 62,149 - +1.2 62,205 + -1.0 62,206 - +0.2 62,418 + EX28DRAFT_3394 0.14 +0.3 62,419 - EX28DRAFT_3394 0.14 +0.8 62,419 - EX28DRAFT_3394 0.14 +1.4 62,420 + EX28DRAFT_3394 0.14 -1.4 62,421 - EX28DRAFT_3394 0.14 -0.5 62,421 - EX28DRAFT_3394 0.14 -0.1 62,421 - EX28DRAFT_3394 0.14 +2.0 62,735 + EX28DRAFT_3394 0.46 +1.1 62,736 - EX28DRAFT_3394 0.46 -0.2 62,863 + EX28DRAFT_3394 0.60 -0.1 62,864 - EX28DRAFT_3394 0.60 -0.8 62,916 - EX28DRAFT_3394 0.65 -0.3 62,916 - EX28DRAFT_3394 0.65 -0.9 62,970 + EX28DRAFT_3394 0.71 +0.4 62,970 + EX28DRAFT_3394 0.71 +0.3 63,017 + EX28DRAFT_3394 0.76 -4.4 63,018 - EX28DRAFT_3394 0.76 -1.0 63,020 + EX28DRAFT_3394 0.76 -0.4 63,021 - EX28DRAFT_3394 0.76 -0.4 63,021 - EX28DRAFT_3394 0.76 -2.7 63,021 - EX28DRAFT_3394 0.76 -0.5 63,024 + EX28DRAFT_3394 0.76 -0.2 63,025 - EX28DRAFT_3394 0.76 -0.1 63,025 - EX28DRAFT_3394 0.76 +0.7 63,160 + -0.9 63,233 + -0.2 63,233 + -0.8 63,233 + -1.2 63,234 - -1.1 63,234 - -1.8 63,234 - +0.7 63,235 + -1.8 63,235 + +0.9 63,235 + +0.2 63,235 + +0.2 63,235 + -2.6 63,236 - -2.4 63,236 - +0.0 63,236 - -3.3 63,236 - -1.6 63,246 + +0.6 63,269 - +0.7 63,269 - -1.4 63,272 + -0.4 63,272 + -0.0 63,272 + +0.6 63,273 - +1.1 63,288 + +0.6 63,288 + -1.0 63,289 - -0.1 63,289 - +1.7 63,314 + +1.3 63,367 - -0.0 63,397 + +0.0 63,397 + +0.2 63,603 + EX28DRAFT_3395 0.33 +1.6 63,605 + EX28DRAFT_3395 0.34 +0.8 63,605 + EX28DRAFT_3395 0.34 +0.8 63,605 + EX28DRAFT_3395 0.34 -0.5 63,606 - EX28DRAFT_3395 0.34 +0.0 63,606 - EX28DRAFT_3395 0.34 +1.1 63,606 - EX28DRAFT_3395 0.34 -1.8 63,621 - EX28DRAFT_3395 0.36 +2.6 63,712 + EX28DRAFT_3395 0.47 -1.0 63,811 - EX28DRAFT_3395 0.59 +0.2 63,863 + EX28DRAFT_3395 0.65 +0.2 63,863 + EX28DRAFT_3395 0.65 +0.7 63,863 + EX28DRAFT_3395 0.65 -1.3 63,863 + EX28DRAFT_3395 0.65 +0.1 63,934 - EX28DRAFT_3395 0.73 -2.0 64,056 + EX28DRAFT_3395 0.88 +0.0 64,057 - EX28DRAFT_3395 0.88 -0.2 64,129 - -0.2 64,234 - +1.2
Or see this region's nucleotide sequence