Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3380

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3379 and EX28DRAFT_3380 overlap by 4 nucleotidesEX28DRAFT_3380 and EX28DRAFT_3381 are separated by 172 nucleotidesEX28DRAFT_3381 and EX28DRAFT_3382 are separated by 148 nucleotides EX28DRAFT_3379: EX28DRAFT_3379 - Acyl-CoA dehydrogenases, at 48,705 to 50,327 _3379 EX28DRAFT_3380: EX28DRAFT_3380 - Methyl-accepting chemotaxis protein, at 50,324 to 52,255 _3380 EX28DRAFT_3381: EX28DRAFT_3381 - Protein of unknown function (DUF1471), at 52,428 to 52,703 _3381 EX28DRAFT_3382: EX28DRAFT_3382 - Protein of unknown function (DUF1471), at 52,852 to 53,160 _3382 Position (kb) 50 51 52 53Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 49.327 kb on - strand, within EX28DRAFT_3379at 49.343 kb on + strand, within EX28DRAFT_3379at 49.343 kb on + strand, within EX28DRAFT_3379at 49.659 kb on + strand, within EX28DRAFT_3379at 49.660 kb on - strand, within EX28DRAFT_3379at 49.660 kb on - strand, within EX28DRAFT_3379at 49.726 kb on + strand, within EX28DRAFT_3379at 49.862 kb on + strand, within EX28DRAFT_3379at 49.971 kb on - strand, within EX28DRAFT_3379at 49.991 kb on + strand, within EX28DRAFT_3379at 49.992 kb on - strand, within EX28DRAFT_3379at 50.130 kb on - strand, within EX28DRAFT_3379at 50.428 kb on + strandat 50.429 kb on - strandat 50.534 kb on - strand, within EX28DRAFT_3380at 50.624 kb on + strand, within EX28DRAFT_3380at 51.118 kb on + strand, within EX28DRAFT_3380at 51.119 kb on - strand, within EX28DRAFT_3380at 51.119 kb on - strand, within EX28DRAFT_3380at 51.389 kb on - strand, within EX28DRAFT_3380at 51.390 kb on + strand, within EX28DRAFT_3380at 51.391 kb on - strand, within EX28DRAFT_3380at 51.425 kb on - strand, within EX28DRAFT_3380at 51.425 kb on - strand, within EX28DRAFT_3380at 51.425 kb on - strand, within EX28DRAFT_3380at 51.519 kb on + strand, within EX28DRAFT_3380at 51.699 kb on + strand, within EX28DRAFT_3380at 51.914 kb on - strand, within EX28DRAFT_3380at 51.914 kb on - strand, within EX28DRAFT_3380at 51.958 kb on + strand, within EX28DRAFT_3380at 51.959 kb on - strand, within EX28DRAFT_3380at 51.988 kb on + strand, within EX28DRAFT_3380at 51.989 kb on - strand, within EX28DRAFT_3380at 52.035 kb on + strand, within EX28DRAFT_3380at 52.035 kb on + strand, within EX28DRAFT_3380at 52.036 kb on - strand, within EX28DRAFT_3380at 52.036 kb on - strand, within EX28DRAFT_3380at 52.036 kb on - strand, within EX28DRAFT_3380at 52.036 kb on - strand, within EX28DRAFT_3380at 52.036 kb on - strand, within EX28DRAFT_3380at 52.066 kb on + strandat 52.066 kb on + strandat 52.279 kb on - strandat 52.429 kb on + strandat 52.527 kb on + strand, within EX28DRAFT_3381at 52.572 kb on - strand, within EX28DRAFT_3381at 52.722 kb on + strandat 52.722 kb on + strandat 52.723 kb on - strandat 52.756 kb on + strandat 52.790 kb on - strandat 52.811 kb on - strandat 52.811 kb on - strandat 52.828 kb on + strandat 52.854 kb on - strandat 52.857 kb on + strandat 52.857 kb on + strandat 52.858 kb on - strandat 52.858 kb on - strandat 52.858 kb on - strandat 52.894 kb on + strand, within EX28DRAFT_3382at 52.926 kb on - strand, within EX28DRAFT_3382at 52.926 kb on - strand, within EX28DRAFT_3382at 52.929 kb on - strand, within EX28DRAFT_3382at 53.024 kb on - strand, within EX28DRAFT_3382at 53.154 kb on + strandat 53.160 kb on + strandat 53.160 kb on + strandat 53.160 kb on + strandat 53.161 kb on - strandat 53.181 kb on + strandat 53.181 kb on + strandat 53.182 kb on - strandat 53.186 kb on + strandat 53.186 kb on + strandat 53.186 kb on + strandat 53.186 kb on + strandat 53.187 kb on - strandat 53.242 kb on - strandat 53.242 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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49,327 - EX28DRAFT_3379 0.38 -1.0
49,343 + EX28DRAFT_3379 0.39 +0.1
49,343 + EX28DRAFT_3379 0.39 -0.1
49,659 + EX28DRAFT_3379 0.59 -1.5
49,660 - EX28DRAFT_3379 0.59 -0.5
49,660 - EX28DRAFT_3379 0.59 +0.4
49,726 + EX28DRAFT_3379 0.63 -1.6
49,862 + EX28DRAFT_3379 0.71 -1.3
49,971 - EX28DRAFT_3379 0.78 -2.5
49,991 + EX28DRAFT_3379 0.79 -2.5
49,992 - EX28DRAFT_3379 0.79 -0.2
50,130 - EX28DRAFT_3379 0.88 +0.1
50,428 + -1.3
50,429 - +0.2
50,534 - EX28DRAFT_3380 0.11 -0.1
50,624 + EX28DRAFT_3380 0.16 +0.4
51,118 + EX28DRAFT_3380 0.41 -2.0
51,119 - EX28DRAFT_3380 0.41 -1.8
51,119 - EX28DRAFT_3380 0.41 -0.9
51,389 - EX28DRAFT_3380 0.55 -3.9
51,390 + EX28DRAFT_3380 0.55 -2.4
51,391 - EX28DRAFT_3380 0.55 -0.1
51,425 - EX28DRAFT_3380 0.57 +0.2
51,425 - EX28DRAFT_3380 0.57 -0.6
51,425 - EX28DRAFT_3380 0.57 -0.5
51,519 + EX28DRAFT_3380 0.62 -1.0
51,699 + EX28DRAFT_3380 0.71 +0.2
51,914 - EX28DRAFT_3380 0.82 -0.5
51,914 - EX28DRAFT_3380 0.82 -0.1
51,958 + EX28DRAFT_3380 0.85 -2.4
51,959 - EX28DRAFT_3380 0.85 -0.8
51,988 + EX28DRAFT_3380 0.86 +0.5
51,989 - EX28DRAFT_3380 0.86 -1.2
52,035 + EX28DRAFT_3380 0.89 -0.2
52,035 + EX28DRAFT_3380 0.89 -1.0
52,036 - EX28DRAFT_3380 0.89 -0.2
52,036 - EX28DRAFT_3380 0.89 -0.4
52,036 - EX28DRAFT_3380 0.89 -0.7
52,036 - EX28DRAFT_3380 0.89 +0.0
52,036 - EX28DRAFT_3380 0.89 -0.1
52,066 + -0.4
52,066 + +0.3
52,279 - -0.1
52,429 + +0.1
52,527 + EX28DRAFT_3381 0.36 -0.4
52,572 - EX28DRAFT_3381 0.52 -1.8
52,722 + +0.3
52,722 + -0.7
52,723 - +0.3
52,756 + +0.1
52,790 - -1.3
52,811 - +1.1
52,811 - +0.6
52,828 + +0.7
52,854 - -0.4
52,857 + +0.9
52,857 + +0.6
52,858 - -0.2
52,858 - +0.5
52,858 - -1.8
52,894 + EX28DRAFT_3382 0.14 -0.7
52,926 - EX28DRAFT_3382 0.24 -2.9
52,926 - EX28DRAFT_3382 0.24 -0.3
52,929 - EX28DRAFT_3382 0.25 -3.8
53,024 - EX28DRAFT_3382 0.56 +0.5
53,154 + -0.8
53,160 + +0.1
53,160 + -0.1
53,160 + +0.1
53,161 - +0.4
53,181 + +0.9
53,181 + +0.6
53,182 - -0.5
53,186 + -1.0
53,186 + -3.2
53,186 + -0.9
53,186 + +0.3
53,187 - -1.0
53,242 - -0.1
53,242 - +0.9

Or see this region's nucleotide sequence