Experiment: M9 with sucrose and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3366 and EX28DRAFT_3367 are separated by 9 nucleotides EX28DRAFT_3367 and EX28DRAFT_3368 overlap by 8 nucleotides
EX28DRAFT_3366: EX28DRAFT_3366 - N-acetylmuramoyl-L-alanine amidase, at 33,300 to 34,706
_3366
EX28DRAFT_3367: EX28DRAFT_3367 - DNA mismatch repair protein MutL, at 34,716 to 36,560
_3367
EX28DRAFT_3368: EX28DRAFT_3368 - tRNA dimethylallyltransferase, at 36,553 to 37,503
_3368
Position (kb)
34
35
36
37 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 33.720 kb on + strand, within EX28DRAFT_3366 at 33.720 kb on + strand, within EX28DRAFT_3366 at 33.734 kb on + strand, within EX28DRAFT_3366 at 33.803 kb on + strand, within EX28DRAFT_3366 at 33.806 kb on - strand, within EX28DRAFT_3366 at 33.806 kb on - strand, within EX28DRAFT_3366 at 33.807 kb on + strand, within EX28DRAFT_3366 at 33.807 kb on + strand, within EX28DRAFT_3366 at 33.808 kb on - strand, within EX28DRAFT_3366 at 33.808 kb on - strand, within EX28DRAFT_3366 at 33.808 kb on - strand, within EX28DRAFT_3366 at 33.809 kb on + strand, within EX28DRAFT_3366 at 33.809 kb on + strand, within EX28DRAFT_3366 at 33.809 kb on + strand, within EX28DRAFT_3366 at 33.809 kb on + strand, within EX28DRAFT_3366 at 33.810 kb on - strand, within EX28DRAFT_3366 at 33.810 kb on - strand, within EX28DRAFT_3366 at 33.810 kb on - strand, within EX28DRAFT_3366 at 33.888 kb on - strand, within EX28DRAFT_3366 at 34.070 kb on + strand, within EX28DRAFT_3366 at 34.071 kb on - strand, within EX28DRAFT_3366 at 34.071 kb on - strand, within EX28DRAFT_3366 at 34.071 kb on - strand, within EX28DRAFT_3366 at 34.104 kb on + strand, within EX28DRAFT_3366 at 34.104 kb on + strand, within EX28DRAFT_3366 at 34.105 kb on - strand, within EX28DRAFT_3366 at 34.109 kb on + strand, within EX28DRAFT_3366 at 34.110 kb on - strand, within EX28DRAFT_3366 at 34.110 kb on - strand, within EX28DRAFT_3366 at 34.338 kb on + strand, within EX28DRAFT_3366 at 34.411 kb on + strand, within EX28DRAFT_3366 at 34.445 kb on + strand, within EX28DRAFT_3366 at 34.445 kb on + strand, within EX28DRAFT_3366 at 34.445 kb on + strand, within EX28DRAFT_3366 at 34.446 kb on - strand, within EX28DRAFT_3366 at 34.524 kb on - strand, within EX28DRAFT_3366 at 34.529 kb on + strand, within EX28DRAFT_3366 at 34.593 kb on + strand at 34.594 kb on - strand at 34.594 kb on - strand at 34.594 kb on - strand at 34.704 kb on + strand at 34.704 kb on + strand at 35.039 kb on - strand, within EX28DRAFT_3367 at 35.169 kb on + strand, within EX28DRAFT_3367 at 35.169 kb on + strand, within EX28DRAFT_3367 at 35.196 kb on - strand, within EX28DRAFT_3367 at 35.484 kb on + strand, within EX28DRAFT_3367 at 35.485 kb on - strand, within EX28DRAFT_3367 at 35.586 kb on + strand, within EX28DRAFT_3367 at 35.586 kb on + strand, within EX28DRAFT_3367 at 35.587 kb on - strand, within EX28DRAFT_3367 at 35.617 kb on + strand, within EX28DRAFT_3367 at 35.618 kb on - strand, within EX28DRAFT_3367 at 35.618 kb on - strand, within EX28DRAFT_3367 at 35.678 kb on + strand, within EX28DRAFT_3367 at 35.679 kb on - strand, within EX28DRAFT_3367 at 35.928 kb on + strand, within EX28DRAFT_3367 at 36.187 kb on + strand, within EX28DRAFT_3367 at 36.208 kb on + strand, within EX28DRAFT_3367 at 36.509 kb on - strand at 36.511 kb on + strand at 36.512 kb on - strand at 37.322 kb on - strand, within EX28DRAFT_3368 at 37.342 kb on + strand, within EX28DRAFT_3368 at 37.509 kb on + strand at 37.509 kb on + strand at 37.509 kb on + strand at 37.522 kb on + strand at 37.555 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM remove 33,720 + EX28DRAFT_3366 0.30 -0.1 33,720 + EX28DRAFT_3366 0.30 -0.6 33,734 + EX28DRAFT_3366 0.31 -0.2 33,803 + EX28DRAFT_3366 0.36 -0.3 33,806 - EX28DRAFT_3366 0.36 -0.6 33,806 - EX28DRAFT_3366 0.36 +0.1 33,807 + EX28DRAFT_3366 0.36 -0.5 33,807 + EX28DRAFT_3366 0.36 -2.0 33,808 - EX28DRAFT_3366 0.36 +0.1 33,808 - EX28DRAFT_3366 0.36 -1.8 33,808 - EX28DRAFT_3366 0.36 +0.4 33,809 + EX28DRAFT_3366 0.36 +0.1 33,809 + EX28DRAFT_3366 0.36 -0.3 33,809 + EX28DRAFT_3366 0.36 -0.4 33,809 + EX28DRAFT_3366 0.36 +0.3 33,810 - EX28DRAFT_3366 0.36 -0.2 33,810 - EX28DRAFT_3366 0.36 +0.2 33,810 - EX28DRAFT_3366 0.36 -2.2 33,888 - EX28DRAFT_3366 0.42 +0.2 34,070 + EX28DRAFT_3366 0.55 -0.1 34,071 - EX28DRAFT_3366 0.55 +0.0 34,071 - EX28DRAFT_3366 0.55 -0.6 34,071 - EX28DRAFT_3366 0.55 -1.4 34,104 + EX28DRAFT_3366 0.57 +0.6 34,104 + EX28DRAFT_3366 0.57 +0.6 34,105 - EX28DRAFT_3366 0.57 -0.3 34,109 + EX28DRAFT_3366 0.57 +0.1 34,110 - EX28DRAFT_3366 0.58 -1.6 34,110 - EX28DRAFT_3366 0.58 -2.2 34,338 + EX28DRAFT_3366 0.74 -0.2 34,411 + EX28DRAFT_3366 0.79 +0.2 34,445 + EX28DRAFT_3366 0.81 -0.7 34,445 + EX28DRAFT_3366 0.81 -0.8 34,445 + EX28DRAFT_3366 0.81 -0.2 34,446 - EX28DRAFT_3366 0.81 -0.3 34,524 - EX28DRAFT_3366 0.87 -2.8 34,529 + EX28DRAFT_3366 0.87 -0.1 34,593 + +0.2 34,594 - +0.9 34,594 - -0.9 34,594 - +0.7 34,704 + +0.5 34,704 + -0.8 35,039 - EX28DRAFT_3367 0.18 -2.4 35,169 + EX28DRAFT_3367 0.25 -2.1 35,169 + EX28DRAFT_3367 0.25 -0.5 35,196 - EX28DRAFT_3367 0.26 +1.1 35,484 + EX28DRAFT_3367 0.42 -2.7 35,485 - EX28DRAFT_3367 0.42 -0.1 35,586 + EX28DRAFT_3367 0.47 -0.8 35,586 + EX28DRAFT_3367 0.47 -0.4 35,587 - EX28DRAFT_3367 0.47 -0.9 35,617 + EX28DRAFT_3367 0.49 -0.2 35,618 - EX28DRAFT_3367 0.49 -2.9 35,618 - EX28DRAFT_3367 0.49 -3.1 35,678 + EX28DRAFT_3367 0.52 -0.6 35,679 - EX28DRAFT_3367 0.52 +0.5 35,928 + EX28DRAFT_3367 0.66 -0.9 36,187 + EX28DRAFT_3367 0.80 -3.0 36,208 + EX28DRAFT_3367 0.81 +0.2 36,509 - -0.7 36,511 + +0.8 36,512 - -2.2 37,322 - EX28DRAFT_3368 0.81 +2.6 37,342 + EX28DRAFT_3368 0.83 +0.2 37,509 + -1.0 37,509 + -0.1 37,509 + -0.2 37,522 + +0.2 37,555 + +0.2
Or see this region's nucleotide sequence