Experiment: M9 with sucrose and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3062 and EX28DRAFT_3063 overlap by 4 nucleotides EX28DRAFT_3063 and EX28DRAFT_3064 are separated by 9 nucleotides EX28DRAFT_3064 and EX28DRAFT_3065 overlap by 4 nucleotides EX28DRAFT_3065 and EX28DRAFT_3066 overlap by 4 nucleotides
EX28DRAFT_3062: EX28DRAFT_3062 - transcriptional regulator, RpiR family, at 371,166 to 372,053
_3062
EX28DRAFT_3063: EX28DRAFT_3063 - ABC-type Fe3+-hydroxamate transport system, periplasmic component, at 372,050 to 373,000
_3063
EX28DRAFT_3064: EX28DRAFT_3064 - ABC-type Fe3+-siderophore transport system, permease component, at 373,010 to 374,050
_3064
EX28DRAFT_3065: EX28DRAFT_3065 - ABC-type Fe3+-siderophore transport system, permease component, at 374,047 to 375,030
_3065
EX28DRAFT_3066: EX28DRAFT_3066 - ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components, at 375,027 to 375,839
_3066
Position (kb) 373
374
375 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 372.095 kb on + strand at 372.096 kb on - strand at 372.096 kb on - strand at 372.127 kb on - strand at 372.405 kb on + strand, within EX28DRAFT_3063 at 372.406 kb on - strand, within EX28DRAFT_3063 at 372.526 kb on + strand, within EX28DRAFT_3063 at 372.568 kb on - strand, within EX28DRAFT_3063 at 372.568 kb on - strand, within EX28DRAFT_3063 at 372.664 kb on + strand, within EX28DRAFT_3063 at 372.728 kb on - strand, within EX28DRAFT_3063 at 372.728 kb on - strand, within EX28DRAFT_3063 at 372.929 kb on - strand at 372.990 kb on - strand at 373.012 kb on - strand at 373.239 kb on - strand, within EX28DRAFT_3064 at 373.239 kb on - strand, within EX28DRAFT_3064 at 373.511 kb on - strand, within EX28DRAFT_3064 at 373.604 kb on + strand, within EX28DRAFT_3064 at 373.604 kb on + strand, within EX28DRAFT_3064 at 373.604 kb on + strand, within EX28DRAFT_3064 at 373.605 kb on - strand, within EX28DRAFT_3064 at 373.845 kb on + strand, within EX28DRAFT_3064 at 373.846 kb on - strand, within EX28DRAFT_3064 at 373.965 kb on - strand at 374.106 kb on + strand at 374.971 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM remove 372,095 + -0.8 372,096 - -1.0 372,096 - +0.8 372,127 - +1.3 372,405 + EX28DRAFT_3063 0.37 +0.0 372,406 - EX28DRAFT_3063 0.37 +0.0 372,526 + EX28DRAFT_3063 0.50 +1.0 372,568 - EX28DRAFT_3063 0.54 +0.1 372,568 - EX28DRAFT_3063 0.54 +0.3 372,664 + EX28DRAFT_3063 0.65 +0.7 372,728 - EX28DRAFT_3063 0.71 -0.3 372,728 - EX28DRAFT_3063 0.71 -3.2 372,929 - +0.2 372,990 - -0.7 373,012 - +0.0 373,239 - EX28DRAFT_3064 0.22 -3.0 373,239 - EX28DRAFT_3064 0.22 -1.7 373,511 - EX28DRAFT_3064 0.48 +0.6 373,604 + EX28DRAFT_3064 0.57 -0.1 373,604 + EX28DRAFT_3064 0.57 +0.1 373,604 + EX28DRAFT_3064 0.57 -0.4 373,605 - EX28DRAFT_3064 0.57 -0.6 373,845 + EX28DRAFT_3064 0.80 -0.7 373,846 - EX28DRAFT_3064 0.80 -0.3 373,965 - +0.0 374,106 + -0.3 374,971 - -0.4
Or see this region's nucleotide sequence