Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3027

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3026 and EX28DRAFT_3027 are separated by 45 nucleotidesEX28DRAFT_3027 and EX28DRAFT_3028 are separated by 245 nucleotides EX28DRAFT_3026: EX28DRAFT_3026 - ABC-type dipeptide/oligopeptide/nickel transport systems, permease components, at 337,194 to 338,147 _3026 EX28DRAFT_3027: EX28DRAFT_3027 - ABC-type dipeptide transport system, periplasmic component, at 338,193 to 339,782 _3027 EX28DRAFT_3028: EX28DRAFT_3028 - Glutathione S-transferase, at 340,028 to 340,894 _3028 Position (kb) 338 339 340Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 337.231 kb on + strandat 337.295 kb on + strand, within EX28DRAFT_3026at 337.378 kb on + strand, within EX28DRAFT_3026at 337.379 kb on - strand, within EX28DRAFT_3026at 337.379 kb on - strand, within EX28DRAFT_3026at 337.421 kb on + strand, within EX28DRAFT_3026at 337.547 kb on - strand, within EX28DRAFT_3026at 337.555 kb on + strand, within EX28DRAFT_3026at 337.587 kb on - strand, within EX28DRAFT_3026at 337.738 kb on + strand, within EX28DRAFT_3026at 337.738 kb on + strand, within EX28DRAFT_3026at 337.738 kb on + strand, within EX28DRAFT_3026at 337.739 kb on - strand, within EX28DRAFT_3026at 337.746 kb on + strand, within EX28DRAFT_3026at 337.746 kb on + strand, within EX28DRAFT_3026at 337.778 kb on + strand, within EX28DRAFT_3026at 337.778 kb on + strand, within EX28DRAFT_3026at 337.778 kb on + strand, within EX28DRAFT_3026at 337.779 kb on - strand, within EX28DRAFT_3026at 337.955 kb on - strand, within EX28DRAFT_3026at 338.030 kb on + strand, within EX28DRAFT_3026at 338.031 kb on - strand, within EX28DRAFT_3026at 338.035 kb on + strand, within EX28DRAFT_3026at 338.036 kb on - strand, within EX28DRAFT_3026at 338.093 kb on + strandat 338.094 kb on - strandat 338.190 kb on + strandat 338.190 kb on + strandat 338.191 kb on - strandat 338.230 kb on + strandat 338.230 kb on + strandat 338.300 kb on - strandat 338.300 kb on - strandat 338.315 kb on - strandat 338.354 kb on - strand, within EX28DRAFT_3027at 338.354 kb on - strand, within EX28DRAFT_3027at 338.443 kb on + strand, within EX28DRAFT_3027at 338.443 kb on + strand, within EX28DRAFT_3027at 338.443 kb on + strand, within EX28DRAFT_3027at 338.443 kb on + strand, within EX28DRAFT_3027at 338.444 kb on - strand, within EX28DRAFT_3027at 338.444 kb on - strand, within EX28DRAFT_3027at 338.621 kb on + strand, within EX28DRAFT_3027at 338.623 kb on + strand, within EX28DRAFT_3027at 338.623 kb on + strand, within EX28DRAFT_3027at 338.663 kb on - strand, within EX28DRAFT_3027at 338.663 kb on - strand, within EX28DRAFT_3027at 338.740 kb on + strand, within EX28DRAFT_3027at 338.740 kb on + strand, within EX28DRAFT_3027at 338.771 kb on + strand, within EX28DRAFT_3027at 338.771 kb on + strand, within EX28DRAFT_3027at 338.771 kb on + strand, within EX28DRAFT_3027at 338.807 kb on - strand, within EX28DRAFT_3027at 338.858 kb on - strand, within EX28DRAFT_3027at 338.858 kb on - strand, within EX28DRAFT_3027at 338.858 kb on - strand, within EX28DRAFT_3027at 339.127 kb on + strand, within EX28DRAFT_3027at 339.299 kb on + strand, within EX28DRAFT_3027at 339.299 kb on + strand, within EX28DRAFT_3027at 339.300 kb on - strand, within EX28DRAFT_3027at 339.463 kb on - strand, within EX28DRAFT_3027at 339.474 kb on - strand, within EX28DRAFT_3027at 339.475 kb on + strand, within EX28DRAFT_3027at 339.539 kb on + strand, within EX28DRAFT_3027at 339.540 kb on - strand, within EX28DRAFT_3027at 339.548 kb on - strand, within EX28DRAFT_3027at 339.559 kb on + strand, within EX28DRAFT_3027at 339.602 kb on - strand, within EX28DRAFT_3027at 339.602 kb on - strand, within EX28DRAFT_3027at 339.635 kb on + strandat 339.649 kb on - strandat 339.649 kb on - strandat 339.803 kb on + strandat 339.831 kb on + strandat 339.832 kb on - strandat 339.832 kb on - strandat 339.846 kb on + strandat 339.871 kb on + strandat 339.917 kb on - strandat 339.917 kb on - strandat 339.918 kb on + strandat 339.919 kb on - strandat 339.919 kb on - strandat 339.919 kb on - strandat 339.920 kb on + strandat 339.920 kb on + strandat 339.921 kb on - strandat 339.991 kb on - strandat 340.111 kb on + strandat 340.170 kb on - strand, within EX28DRAFT_3028at 340.388 kb on - strand, within EX28DRAFT_3028at 340.520 kb on + strand, within EX28DRAFT_3028at 340.520 kb on + strand, within EX28DRAFT_3028at 340.521 kb on - strand, within EX28DRAFT_3028at 340.521 kb on - strand, within EX28DRAFT_3028at 340.526 kb on + strand, within EX28DRAFT_3028at 340.526 kb on + strand, within EX28DRAFT_3028at 340.527 kb on - strand, within EX28DRAFT_3028at 340.527 kb on - strand, within EX28DRAFT_3028at 340.527 kb on - strand, within EX28DRAFT_3028at 340.640 kb on + strand, within EX28DRAFT_3028at 340.640 kb on + strand, within EX28DRAFT_3028at 340.640 kb on + strand, within EX28DRAFT_3028at 340.640 kb on + strand, within EX28DRAFT_3028at 340.641 kb on - strand, within EX28DRAFT_3028at 340.641 kb on - strand, within EX28DRAFT_3028at 340.734 kb on - strand, within EX28DRAFT_3028at 340.739 kb on - strand, within EX28DRAFT_3028

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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337,231 + -1.1
337,295 + EX28DRAFT_3026 0.11 -2.9
337,378 + EX28DRAFT_3026 0.19 -0.4
337,379 - EX28DRAFT_3026 0.19 -0.4
337,379 - EX28DRAFT_3026 0.19 +0.2
337,421 + EX28DRAFT_3026 0.24 -2.4
337,547 - EX28DRAFT_3026 0.37 -2.0
337,555 + EX28DRAFT_3026 0.38 +0.6
337,587 - EX28DRAFT_3026 0.41 +0.4
337,738 + EX28DRAFT_3026 0.57 +0.1
337,738 + EX28DRAFT_3026 0.57 -1.4
337,738 + EX28DRAFT_3026 0.57 -0.0
337,739 - EX28DRAFT_3026 0.57 -0.2
337,746 + EX28DRAFT_3026 0.58 +1.2
337,746 + EX28DRAFT_3026 0.58 +0.4
337,778 + EX28DRAFT_3026 0.61 -2.1
337,778 + EX28DRAFT_3026 0.61 +0.3
337,778 + EX28DRAFT_3026 0.61 +0.5
337,779 - EX28DRAFT_3026 0.61 +1.7
337,955 - EX28DRAFT_3026 0.80 -2.6
338,030 + EX28DRAFT_3026 0.88 +0.6
338,031 - EX28DRAFT_3026 0.88 -0.6
338,035 + EX28DRAFT_3026 0.88 +0.5
338,036 - EX28DRAFT_3026 0.88 +0.6
338,093 + -0.5
338,094 - -0.0
338,190 + -1.1
338,190 + +0.6
338,191 - -1.8
338,230 + -1.4
338,230 + -1.7
338,300 - +0.3
338,300 - +1.6
338,315 - -0.4
338,354 - EX28DRAFT_3027 0.10 -0.4
338,354 - EX28DRAFT_3027 0.10 +0.1
338,443 + EX28DRAFT_3027 0.16 +0.7
338,443 + EX28DRAFT_3027 0.16 +0.6
338,443 + EX28DRAFT_3027 0.16 -0.3
338,443 + EX28DRAFT_3027 0.16 +0.6
338,444 - EX28DRAFT_3027 0.16 -0.2
338,444 - EX28DRAFT_3027 0.16 +0.6
338,621 + EX28DRAFT_3027 0.27 +1.2
338,623 + EX28DRAFT_3027 0.27 -1.6
338,623 + EX28DRAFT_3027 0.27 +0.6
338,663 - EX28DRAFT_3027 0.30 -0.3
338,663 - EX28DRAFT_3027 0.30 -0.7
338,740 + EX28DRAFT_3027 0.34 +1.6
338,740 + EX28DRAFT_3027 0.34 +0.1
338,771 + EX28DRAFT_3027 0.36 +0.3
338,771 + EX28DRAFT_3027 0.36 -1.2
338,771 + EX28DRAFT_3027 0.36 +0.2
338,807 - EX28DRAFT_3027 0.39 -1.7
338,858 - EX28DRAFT_3027 0.42 -2.4
338,858 - EX28DRAFT_3027 0.42 -2.4
338,858 - EX28DRAFT_3027 0.42 -0.5
339,127 + EX28DRAFT_3027 0.59 -0.4
339,299 + EX28DRAFT_3027 0.70 -2.0
339,299 + EX28DRAFT_3027 0.70 -0.1
339,300 - EX28DRAFT_3027 0.70 -3.5
339,463 - EX28DRAFT_3027 0.80 +0.0
339,474 - EX28DRAFT_3027 0.81 -2.7
339,475 + EX28DRAFT_3027 0.81 -0.1
339,539 + EX28DRAFT_3027 0.85 -0.3
339,540 - EX28DRAFT_3027 0.85 +3.0
339,548 - EX28DRAFT_3027 0.85 -0.4
339,559 + EX28DRAFT_3027 0.86 -0.3
339,602 - EX28DRAFT_3027 0.89 -1.7
339,602 - EX28DRAFT_3027 0.89 -1.8
339,635 + -2.3
339,649 - -2.9
339,649 - -0.2
339,803 + +0.2
339,831 + +0.2
339,832 - -0.4
339,832 - -2.6
339,846 + +1.2
339,871 + -0.2
339,917 - +1.9
339,917 - -0.5
339,918 + +1.1
339,919 - -2.8
339,919 - -0.7
339,919 - +0.4
339,920 + -2.8
339,920 + -0.5
339,921 - -0.5
339,991 - -0.2
340,111 + +0.7
340,170 - EX28DRAFT_3028 0.16 +0.6
340,388 - EX28DRAFT_3028 0.42 -0.8
340,520 + EX28DRAFT_3028 0.57 +0.1
340,520 + EX28DRAFT_3028 0.57 +0.4
340,521 - EX28DRAFT_3028 0.57 +1.0
340,521 - EX28DRAFT_3028 0.57 +0.1
340,526 + EX28DRAFT_3028 0.57 +0.4
340,526 + EX28DRAFT_3028 0.57 -1.0
340,527 - EX28DRAFT_3028 0.58 +1.1
340,527 - EX28DRAFT_3028 0.58 +0.5
340,527 - EX28DRAFT_3028 0.58 +3.8
340,640 + EX28DRAFT_3028 0.71 -1.0
340,640 + EX28DRAFT_3028 0.71 +2.2
340,640 + EX28DRAFT_3028 0.71 -0.7
340,640 + EX28DRAFT_3028 0.71 -3.6
340,641 - EX28DRAFT_3028 0.71 +2.1
340,641 - EX28DRAFT_3028 0.71 +1.4
340,734 - EX28DRAFT_3028 0.81 +0.2
340,739 - EX28DRAFT_3028 0.82 +0.5

Or see this region's nucleotide sequence