Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3006

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3004 and EX28DRAFT_3005 are separated by 10 nucleotidesEX28DRAFT_3005 and EX28DRAFT_3006 overlap by 4 nucleotidesEX28DRAFT_3006 and EX28DRAFT_3007 are separated by 16 nucleotides EX28DRAFT_3004: EX28DRAFT_3004 - citrate lyase, alpha subunit, at 311,948 to 313,471 _3004 EX28DRAFT_3005: EX28DRAFT_3005 - citrate lyase, beta subunit, at 313,482 to 314,357 _3005 EX28DRAFT_3006: EX28DRAFT_3006 - citrate lyase acyl carrier protein, at 314,354 to 314,647 _3006 EX28DRAFT_3007: EX28DRAFT_3007 - [citrate (pro-3S)-lyase] ligase, at 314,664 to 315,686 _3007 Position (kb) 314 315Strain fitness (log2 ratio) -3 -2 -1 0 1at 313.422 kb on - strandat 313.478 kb on - strandat 313.709 kb on + strand, within EX28DRAFT_3005at 313.709 kb on + strand, within EX28DRAFT_3005at 313.838 kb on - strand, within EX28DRAFT_3005at 313.838 kb on - strand, within EX28DRAFT_3005at 314.050 kb on + strand, within EX28DRAFT_3005at 314.051 kb on - strand, within EX28DRAFT_3005at 314.182 kb on + strand, within EX28DRAFT_3005at 314.183 kb on - strand, within EX28DRAFT_3005at 314.183 kb on - strand, within EX28DRAFT_3005at 314.285 kb on - strandat 314.288 kb on + strandat 314.288 kb on + strandat 314.337 kb on - strandat 314.536 kb on + strand, within EX28DRAFT_3006at 314.665 kb on + strandat 314.789 kb on + strand, within EX28DRAFT_3007at 314.918 kb on + strand, within EX28DRAFT_3007at 314.939 kb on + strand, within EX28DRAFT_3007at 315.011 kb on - strand, within EX28DRAFT_3007at 315.040 kb on + strand, within EX28DRAFT_3007at 315.040 kb on + strand, within EX28DRAFT_3007at 315.040 kb on + strand, within EX28DRAFT_3007

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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313,422 - -0.3
313,478 - -0.3
313,709 + EX28DRAFT_3005 0.26 +0.4
313,709 + EX28DRAFT_3005 0.26 -0.3
313,838 - EX28DRAFT_3005 0.41 -1.9
313,838 - EX28DRAFT_3005 0.41 +0.4
314,050 + EX28DRAFT_3005 0.65 +0.4
314,051 - EX28DRAFT_3005 0.65 -0.5
314,182 + EX28DRAFT_3005 0.80 +0.1
314,183 - EX28DRAFT_3005 0.80 -0.1
314,183 - EX28DRAFT_3005 0.80 +0.7
314,285 - -2.3
314,288 + +0.2
314,288 + -0.1
314,337 - -1.0
314,536 + EX28DRAFT_3006 0.62 -2.0
314,665 + -0.4
314,789 + EX28DRAFT_3007 0.12 -0.4
314,918 + EX28DRAFT_3007 0.25 -3.7
314,939 + EX28DRAFT_3007 0.27 +0.8
315,011 - EX28DRAFT_3007 0.34 +0.6
315,040 + EX28DRAFT_3007 0.37 +0.1
315,040 + EX28DRAFT_3007 0.37 +0.6
315,040 + EX28DRAFT_3007 0.37 -0.7

Or see this region's nucleotide sequence