Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2828

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2826 and EX28DRAFT_2827 are separated by 5 nucleotidesEX28DRAFT_2827 and EX28DRAFT_2828 are separated by 175 nucleotidesEX28DRAFT_2828 and EX28DRAFT_2829 are separated by 113 nucleotides EX28DRAFT_2826: EX28DRAFT_2826 - Major Facilitator Superfamily, at 129,524 to 130,744 _2826 EX28DRAFT_2827: EX28DRAFT_2827 - Nitrous oxide-stimulated promoter, at 130,750 to 131,094 _2827 EX28DRAFT_2828: EX28DRAFT_2828 - Toxin SymE, type I toxin-antitoxin system, at 131,270 to 131,500 _2828 EX28DRAFT_2829: EX28DRAFT_2829 - DNA mismatch repair protein MutS, at 131,614 to 134,175 _2829 Position (kb) 131 132Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 130.311 kb on + strand, within EX28DRAFT_2826at 130.311 kb on + strand, within EX28DRAFT_2826at 130.312 kb on - strand, within EX28DRAFT_2826at 130.354 kb on - strand, within EX28DRAFT_2826at 130.521 kb on + strand, within EX28DRAFT_2826at 130.521 kb on + strand, within EX28DRAFT_2826at 130.521 kb on + strand, within EX28DRAFT_2826at 130.665 kb on - strandat 130.766 kb on + strandat 130.766 kb on + strandat 130.845 kb on + strand, within EX28DRAFT_2827at 130.846 kb on - strand, within EX28DRAFT_2827at 130.957 kb on - strand, within EX28DRAFT_2827at 130.957 kb on - strand, within EX28DRAFT_2827at 131.036 kb on + strand, within EX28DRAFT_2827at 131.037 kb on - strand, within EX28DRAFT_2827at 131.223 kb on + strandat 131.269 kb on + strandat 131.298 kb on - strand, within EX28DRAFT_2828at 131.319 kb on - strand, within EX28DRAFT_2828at 131.392 kb on - strand, within EX28DRAFT_2828at 131.423 kb on - strand, within EX28DRAFT_2828at 131.478 kb on + strandat 131.546 kb on - strandat 131.546 kb on - strandat 131.607 kb on + strandat 131.607 kb on + strandat 131.608 kb on - strandat 131.663 kb on - strandat 131.729 kb on + strandat 131.729 kb on + strandat 131.730 kb on - strandat 131.730 kb on - strandat 131.730 kb on - strandat 131.745 kb on + strandat 131.823 kb on + strandat 131.824 kb on - strandat 132.063 kb on + strand, within EX28DRAFT_2829at 132.063 kb on + strand, within EX28DRAFT_2829at 132.063 kb on + strand, within EX28DRAFT_2829at 132.064 kb on - strand, within EX28DRAFT_2829at 132.064 kb on - strand, within EX28DRAFT_2829at 132.064 kb on - strand, within EX28DRAFT_2829at 132.384 kb on + strand, within EX28DRAFT_2829at 132.439 kb on - strand, within EX28DRAFT_2829at 132.474 kb on - strand, within EX28DRAFT_2829at 132.480 kb on + strand, within EX28DRAFT_2829at 132.481 kb on - strand, within EX28DRAFT_2829

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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130,311 + EX28DRAFT_2826 0.64 +0.3
130,311 + EX28DRAFT_2826 0.64 +0.3
130,312 - EX28DRAFT_2826 0.65 +1.7
130,354 - EX28DRAFT_2826 0.68 -0.2
130,521 + EX28DRAFT_2826 0.82 +2.5
130,521 + EX28DRAFT_2826 0.82 -1.8
130,521 + EX28DRAFT_2826 0.82 +0.3
130,665 - +1.1
130,766 + +0.1
130,766 + +0.5
130,845 + EX28DRAFT_2827 0.28 -0.0
130,846 - EX28DRAFT_2827 0.28 -0.4
130,957 - EX28DRAFT_2827 0.60 +0.9
130,957 - EX28DRAFT_2827 0.60 +0.3
131,036 + EX28DRAFT_2827 0.83 +1.0
131,037 - EX28DRAFT_2827 0.83 +0.6
131,223 + -0.6
131,269 + -0.9
131,298 - EX28DRAFT_2828 0.12 -3.8
131,319 - EX28DRAFT_2828 0.21 -1.8
131,392 - EX28DRAFT_2828 0.53 -3.6
131,423 - EX28DRAFT_2828 0.66 +1.8
131,478 + -0.6
131,546 - +0.2
131,546 - +0.1
131,607 + +0.6
131,607 + -1.0
131,608 - -0.0
131,663 - +0.0
131,729 + -0.4
131,729 + -1.7
131,730 - -0.1
131,730 - +0.2
131,730 - -0.7
131,745 + -3.1
131,823 + +0.5
131,824 - -0.0
132,063 + EX28DRAFT_2829 0.18 +0.1
132,063 + EX28DRAFT_2829 0.18 +1.7
132,063 + EX28DRAFT_2829 0.18 -1.2
132,064 - EX28DRAFT_2829 0.18 -0.8
132,064 - EX28DRAFT_2829 0.18 +1.1
132,064 - EX28DRAFT_2829 0.18 +0.4
132,384 + EX28DRAFT_2829 0.30 +0.3
132,439 - EX28DRAFT_2829 0.32 +1.5
132,474 - EX28DRAFT_2829 0.34 -1.2
132,480 + EX28DRAFT_2829 0.34 -3.5
132,481 - EX28DRAFT_2829 0.34 -0.0

Or see this region's nucleotide sequence