Experiment: M9 with sucrose and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2430 and EX28DRAFT_2431 are separated by 65 nucleotides EX28DRAFT_2431 and EX28DRAFT_2432 are separated by 103 nucleotides
EX28DRAFT_2430: EX28DRAFT_2430 - Arabinose efflux permease, at 2,458,290 to 2,459,726
_2430
EX28DRAFT_2431: EX28DRAFT_2431 - Small-conductance mechanosensitive channel, at 2,459,792 to 2,461,036
_2431
EX28DRAFT_2432: EX28DRAFT_2432 - Gamma-aminobutyrate permease and related permeases, at 2,461,140 to 2,462,528
_2432
Position (kb)
2459
2460
2461
2462 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 2459.116 kb on + strand, within EX28DRAFT_2430 at 2459.117 kb on - strand, within EX28DRAFT_2430 at 2459.156 kb on + strand, within EX28DRAFT_2430 at 2459.156 kb on + strand, within EX28DRAFT_2430 at 2459.157 kb on - strand, within EX28DRAFT_2430 at 2459.244 kb on + strand, within EX28DRAFT_2430 at 2459.244 kb on + strand, within EX28DRAFT_2430 at 2459.245 kb on - strand, within EX28DRAFT_2430 at 2459.245 kb on - strand, within EX28DRAFT_2430 at 2459.245 kb on - strand, within EX28DRAFT_2430 at 2459.249 kb on + strand, within EX28DRAFT_2430 at 2459.250 kb on - strand, within EX28DRAFT_2430 at 2459.297 kb on + strand, within EX28DRAFT_2430 at 2459.298 kb on - strand, within EX28DRAFT_2430 at 2459.598 kb on + strand at 2459.724 kb on + strand at 2459.743 kb on - strand at 2459.743 kb on - strand at 2459.745 kb on + strand at 2459.745 kb on + strand at 2459.746 kb on - strand at 2459.746 kb on - strand at 2459.746 kb on - strand at 2459.746 kb on - strand at 2459.746 kb on - strand at 2459.746 kb on - strand at 2459.780 kb on - strand at 2459.823 kb on + strand at 2459.824 kb on - strand at 2459.861 kb on - strand at 2459.902 kb on + strand at 2460.256 kb on + strand, within EX28DRAFT_2431 at 2460.474 kb on + strand, within EX28DRAFT_2431 at 2460.475 kb on - strand, within EX28DRAFT_2431 at 2460.490 kb on + strand, within EX28DRAFT_2431 at 2460.535 kb on + strand, within EX28DRAFT_2431 at 2460.536 kb on - strand, within EX28DRAFT_2431 at 2460.592 kb on + strand, within EX28DRAFT_2431 at 2460.592 kb on + strand, within EX28DRAFT_2431 at 2460.694 kb on + strand, within EX28DRAFT_2431 at 2460.736 kb on - strand, within EX28DRAFT_2431 at 2460.745 kb on + strand, within EX28DRAFT_2431 at 2460.745 kb on + strand, within EX28DRAFT_2431 at 2460.776 kb on + strand, within EX28DRAFT_2431 at 2460.789 kb on - strand, within EX28DRAFT_2431 at 2460.821 kb on - strand, within EX28DRAFT_2431 at 2460.876 kb on + strand, within EX28DRAFT_2431 at 2460.877 kb on - strand, within EX28DRAFT_2431 at 2460.878 kb on + strand, within EX28DRAFT_2431 at 2460.879 kb on - strand, within EX28DRAFT_2431 at 2460.911 kb on + strand, within EX28DRAFT_2431 at 2460.912 kb on - strand at 2461.046 kb on - strand at 2461.289 kb on - strand, within EX28DRAFT_2432 at 2461.438 kb on + strand, within EX28DRAFT_2432 at 2461.438 kb on + strand, within EX28DRAFT_2432 at 2461.439 kb on - strand, within EX28DRAFT_2432 at 2461.439 kb on - strand, within EX28DRAFT_2432 at 2461.443 kb on - strand, within EX28DRAFT_2432 at 2461.580 kb on - strand, within EX28DRAFT_2432 at 2461.594 kb on + strand, within EX28DRAFT_2432 at 2461.595 kb on - strand, within EX28DRAFT_2432 at 2461.595 kb on - strand, within EX28DRAFT_2432 at 2461.747 kb on + strand, within EX28DRAFT_2432 at 2461.748 kb on - strand, within EX28DRAFT_2432
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM remove 2,459,116 + EX28DRAFT_2430 0.57 +0.7 2,459,117 - EX28DRAFT_2430 0.58 -0.4 2,459,156 + EX28DRAFT_2430 0.60 +1.0 2,459,156 + EX28DRAFT_2430 0.60 +1.2 2,459,157 - EX28DRAFT_2430 0.60 -1.7 2,459,244 + EX28DRAFT_2430 0.66 -0.1 2,459,244 + EX28DRAFT_2430 0.66 +0.5 2,459,245 - EX28DRAFT_2430 0.66 -0.5 2,459,245 - EX28DRAFT_2430 0.66 +0.8 2,459,245 - EX28DRAFT_2430 0.66 +2.2 2,459,249 + EX28DRAFT_2430 0.67 -1.5 2,459,250 - EX28DRAFT_2430 0.67 -0.1 2,459,297 + EX28DRAFT_2430 0.70 -1.0 2,459,298 - EX28DRAFT_2430 0.70 +2.1 2,459,598 + +0.4 2,459,724 + +0.8 2,459,743 - -1.0 2,459,743 - -4.1 2,459,745 + -0.6 2,459,745 + -2.7 2,459,746 - +0.3 2,459,746 - +2.3 2,459,746 - +3.9 2,459,746 - -0.2 2,459,746 - +1.5 2,459,746 - -0.2 2,459,780 - +0.3 2,459,823 + +0.3 2,459,824 - -0.7 2,459,861 - -0.2 2,459,902 + -0.3 2,460,256 + EX28DRAFT_2431 0.37 +1.1 2,460,474 + EX28DRAFT_2431 0.55 -2.4 2,460,475 - EX28DRAFT_2431 0.55 -0.5 2,460,490 + EX28DRAFT_2431 0.56 +0.1 2,460,535 + EX28DRAFT_2431 0.60 +0.7 2,460,536 - EX28DRAFT_2431 0.60 +0.1 2,460,592 + EX28DRAFT_2431 0.64 -3.0 2,460,592 + EX28DRAFT_2431 0.64 +0.5 2,460,694 + EX28DRAFT_2431 0.72 +0.5 2,460,736 - EX28DRAFT_2431 0.76 +0.9 2,460,745 + EX28DRAFT_2431 0.77 +0.3 2,460,745 + EX28DRAFT_2431 0.77 -2.4 2,460,776 + EX28DRAFT_2431 0.79 +1.9 2,460,789 - EX28DRAFT_2431 0.80 -4.1 2,460,821 - EX28DRAFT_2431 0.83 +0.5 2,460,876 + EX28DRAFT_2431 0.87 +0.4 2,460,877 - EX28DRAFT_2431 0.87 +0.5 2,460,878 + EX28DRAFT_2431 0.87 -0.5 2,460,879 - EX28DRAFT_2431 0.87 -0.3 2,460,911 + EX28DRAFT_2431 0.90 +0.7 2,460,912 - -0.2 2,461,046 - +0.2 2,461,289 - EX28DRAFT_2432 0.11 -1.6 2,461,438 + EX28DRAFT_2432 0.21 +0.4 2,461,438 + EX28DRAFT_2432 0.21 -0.2 2,461,439 - EX28DRAFT_2432 0.22 -1.5 2,461,439 - EX28DRAFT_2432 0.22 +1.9 2,461,443 - EX28DRAFT_2432 0.22 -0.1 2,461,580 - EX28DRAFT_2432 0.32 +2.0 2,461,594 + EX28DRAFT_2432 0.33 -1.2 2,461,595 - EX28DRAFT_2432 0.33 -0.3 2,461,595 - EX28DRAFT_2432 0.33 -0.4 2,461,747 + EX28DRAFT_2432 0.44 -0.9 2,461,748 - EX28DRAFT_2432 0.44 -2.0
Or see this region's nucleotide sequence