Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2431

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2430 and EX28DRAFT_2431 are separated by 65 nucleotidesEX28DRAFT_2431 and EX28DRAFT_2432 are separated by 103 nucleotides EX28DRAFT_2430: EX28DRAFT_2430 - Arabinose efflux permease, at 2,458,290 to 2,459,726 _2430 EX28DRAFT_2431: EX28DRAFT_2431 - Small-conductance mechanosensitive channel, at 2,459,792 to 2,461,036 _2431 EX28DRAFT_2432: EX28DRAFT_2432 - Gamma-aminobutyrate permease and related permeases, at 2,461,140 to 2,462,528 _2432 Position (kb) 2459 2460 2461 2462Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 2459.116 kb on + strand, within EX28DRAFT_2430at 2459.117 kb on - strand, within EX28DRAFT_2430at 2459.156 kb on + strand, within EX28DRAFT_2430at 2459.156 kb on + strand, within EX28DRAFT_2430at 2459.157 kb on - strand, within EX28DRAFT_2430at 2459.244 kb on + strand, within EX28DRAFT_2430at 2459.244 kb on + strand, within EX28DRAFT_2430at 2459.245 kb on - strand, within EX28DRAFT_2430at 2459.245 kb on - strand, within EX28DRAFT_2430at 2459.245 kb on - strand, within EX28DRAFT_2430at 2459.249 kb on + strand, within EX28DRAFT_2430at 2459.250 kb on - strand, within EX28DRAFT_2430at 2459.297 kb on + strand, within EX28DRAFT_2430at 2459.298 kb on - strand, within EX28DRAFT_2430at 2459.598 kb on + strandat 2459.724 kb on + strandat 2459.743 kb on - strandat 2459.743 kb on - strandat 2459.745 kb on + strandat 2459.745 kb on + strandat 2459.746 kb on - strandat 2459.746 kb on - strandat 2459.746 kb on - strandat 2459.746 kb on - strandat 2459.746 kb on - strandat 2459.746 kb on - strandat 2459.780 kb on - strandat 2459.823 kb on + strandat 2459.824 kb on - strandat 2459.861 kb on - strandat 2459.902 kb on + strandat 2460.256 kb on + strand, within EX28DRAFT_2431at 2460.474 kb on + strand, within EX28DRAFT_2431at 2460.475 kb on - strand, within EX28DRAFT_2431at 2460.490 kb on + strand, within EX28DRAFT_2431at 2460.535 kb on + strand, within EX28DRAFT_2431at 2460.536 kb on - strand, within EX28DRAFT_2431at 2460.592 kb on + strand, within EX28DRAFT_2431at 2460.592 kb on + strand, within EX28DRAFT_2431at 2460.694 kb on + strand, within EX28DRAFT_2431at 2460.736 kb on - strand, within EX28DRAFT_2431at 2460.745 kb on + strand, within EX28DRAFT_2431at 2460.745 kb on + strand, within EX28DRAFT_2431at 2460.776 kb on + strand, within EX28DRAFT_2431at 2460.789 kb on - strand, within EX28DRAFT_2431at 2460.821 kb on - strand, within EX28DRAFT_2431at 2460.876 kb on + strand, within EX28DRAFT_2431at 2460.877 kb on - strand, within EX28DRAFT_2431at 2460.878 kb on + strand, within EX28DRAFT_2431at 2460.879 kb on - strand, within EX28DRAFT_2431at 2460.911 kb on + strand, within EX28DRAFT_2431at 2460.912 kb on - strandat 2461.046 kb on - strandat 2461.289 kb on - strand, within EX28DRAFT_2432at 2461.438 kb on + strand, within EX28DRAFT_2432at 2461.438 kb on + strand, within EX28DRAFT_2432at 2461.439 kb on - strand, within EX28DRAFT_2432at 2461.439 kb on - strand, within EX28DRAFT_2432at 2461.443 kb on - strand, within EX28DRAFT_2432at 2461.580 kb on - strand, within EX28DRAFT_2432at 2461.594 kb on + strand, within EX28DRAFT_2432at 2461.595 kb on - strand, within EX28DRAFT_2432at 2461.595 kb on - strand, within EX28DRAFT_2432at 2461.747 kb on + strand, within EX28DRAFT_2432at 2461.748 kb on - strand, within EX28DRAFT_2432

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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2,459,116 + EX28DRAFT_2430 0.57 +0.7
2,459,117 - EX28DRAFT_2430 0.58 -0.4
2,459,156 + EX28DRAFT_2430 0.60 +1.0
2,459,156 + EX28DRAFT_2430 0.60 +1.2
2,459,157 - EX28DRAFT_2430 0.60 -1.7
2,459,244 + EX28DRAFT_2430 0.66 -0.1
2,459,244 + EX28DRAFT_2430 0.66 +0.5
2,459,245 - EX28DRAFT_2430 0.66 -0.5
2,459,245 - EX28DRAFT_2430 0.66 +0.8
2,459,245 - EX28DRAFT_2430 0.66 +2.2
2,459,249 + EX28DRAFT_2430 0.67 -1.5
2,459,250 - EX28DRAFT_2430 0.67 -0.1
2,459,297 + EX28DRAFT_2430 0.70 -1.0
2,459,298 - EX28DRAFT_2430 0.70 +2.1
2,459,598 + +0.4
2,459,724 + +0.8
2,459,743 - -1.0
2,459,743 - -4.1
2,459,745 + -0.6
2,459,745 + -2.7
2,459,746 - +0.3
2,459,746 - +2.3
2,459,746 - +3.9
2,459,746 - -0.2
2,459,746 - +1.5
2,459,746 - -0.2
2,459,780 - +0.3
2,459,823 + +0.3
2,459,824 - -0.7
2,459,861 - -0.2
2,459,902 + -0.3
2,460,256 + EX28DRAFT_2431 0.37 +1.1
2,460,474 + EX28DRAFT_2431 0.55 -2.4
2,460,475 - EX28DRAFT_2431 0.55 -0.5
2,460,490 + EX28DRAFT_2431 0.56 +0.1
2,460,535 + EX28DRAFT_2431 0.60 +0.7
2,460,536 - EX28DRAFT_2431 0.60 +0.1
2,460,592 + EX28DRAFT_2431 0.64 -3.0
2,460,592 + EX28DRAFT_2431 0.64 +0.5
2,460,694 + EX28DRAFT_2431 0.72 +0.5
2,460,736 - EX28DRAFT_2431 0.76 +0.9
2,460,745 + EX28DRAFT_2431 0.77 +0.3
2,460,745 + EX28DRAFT_2431 0.77 -2.4
2,460,776 + EX28DRAFT_2431 0.79 +1.9
2,460,789 - EX28DRAFT_2431 0.80 -4.1
2,460,821 - EX28DRAFT_2431 0.83 +0.5
2,460,876 + EX28DRAFT_2431 0.87 +0.4
2,460,877 - EX28DRAFT_2431 0.87 +0.5
2,460,878 + EX28DRAFT_2431 0.87 -0.5
2,460,879 - EX28DRAFT_2431 0.87 -0.3
2,460,911 + EX28DRAFT_2431 0.90 +0.7
2,460,912 - -0.2
2,461,046 - +0.2
2,461,289 - EX28DRAFT_2432 0.11 -1.6
2,461,438 + EX28DRAFT_2432 0.21 +0.4
2,461,438 + EX28DRAFT_2432 0.21 -0.2
2,461,439 - EX28DRAFT_2432 0.22 -1.5
2,461,439 - EX28DRAFT_2432 0.22 +1.9
2,461,443 - EX28DRAFT_2432 0.22 -0.1
2,461,580 - EX28DRAFT_2432 0.32 +2.0
2,461,594 + EX28DRAFT_2432 0.33 -1.2
2,461,595 - EX28DRAFT_2432 0.33 -0.3
2,461,595 - EX28DRAFT_2432 0.33 -0.4
2,461,747 + EX28DRAFT_2432 0.44 -0.9
2,461,748 - EX28DRAFT_2432 0.44 -2.0

Or see this region's nucleotide sequence