Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2359

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2358 and EX28DRAFT_2359 are separated by 104 nucleotidesEX28DRAFT_2359 and EX28DRAFT_2360 are separated by 62 nucleotides EX28DRAFT_2358: EX28DRAFT_2358 - S-methyl-5-thioribose-1-phosphate isomerase, at 2,377,779 to 2,378,795 _2358 EX28DRAFT_2359: EX28DRAFT_2359 - 5'-methylthioribose kinase (EC 2.7.1.100), at 2,378,900 to 2,380,099 _2359 EX28DRAFT_2360: EX28DRAFT_2360 - Uncharacterized conserved protein, at 2,380,162 to 2,381,403 _2360 Position (kb) 2378 2379 2380 2381Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2378.026 kb on + strand, within EX28DRAFT_2358at 2378.027 kb on - strand, within EX28DRAFT_2358at 2378.027 kb on - strand, within EX28DRAFT_2358at 2378.069 kb on - strand, within EX28DRAFT_2358at 2378.069 kb on - strand, within EX28DRAFT_2358at 2378.228 kb on + strand, within EX28DRAFT_2358at 2378.229 kb on - strand, within EX28DRAFT_2358at 2378.351 kb on + strand, within EX28DRAFT_2358at 2378.474 kb on - strand, within EX28DRAFT_2358at 2378.474 kb on - strand, within EX28DRAFT_2358at 2378.670 kb on - strand, within EX28DRAFT_2358at 2378.744 kb on + strandat 2378.745 kb on - strandat 2378.801 kb on + strandat 2378.822 kb on + strandat 2378.822 kb on + strandat 2378.823 kb on - strandat 2378.853 kb on + strandat 2378.853 kb on + strandat 2378.853 kb on + strandat 2378.854 kb on - strandat 2378.855 kb on + strandat 2378.856 kb on - strandat 2378.856 kb on - strandat 2378.863 kb on + strandat 2378.872 kb on + strandat 2378.872 kb on + strandat 2378.909 kb on + strandat 2378.914 kb on + strandat 2378.915 kb on - strandat 2379.282 kb on - strand, within EX28DRAFT_2359at 2379.282 kb on - strand, within EX28DRAFT_2359at 2379.314 kb on + strand, within EX28DRAFT_2359at 2379.315 kb on - strand, within EX28DRAFT_2359at 2380.014 kb on + strandat 2380.025 kb on - strandat 2380.101 kb on + strandat 2380.101 kb on + strandat 2380.151 kb on + strandat 2380.197 kb on + strandat 2380.200 kb on - strandat 2380.215 kb on + strandat 2380.352 kb on + strand, within EX28DRAFT_2360at 2380.352 kb on + strand, within EX28DRAFT_2360at 2380.466 kb on + strand, within EX28DRAFT_2360at 2380.467 kb on - strand, within EX28DRAFT_2360at 2380.895 kb on + strand, within EX28DRAFT_2360at 2380.896 kb on - strand, within EX28DRAFT_2360at 2380.929 kb on - strand, within EX28DRAFT_2360at 2381.023 kb on - strand, within EX28DRAFT_2360at 2381.096 kb on + strand, within EX28DRAFT_2360at 2381.096 kb on + strand, within EX28DRAFT_2360at 2381.097 kb on - strand, within EX28DRAFT_2360

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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2,378,026 + EX28DRAFT_2358 0.24 -2.0
2,378,027 - EX28DRAFT_2358 0.24 +0.8
2,378,027 - EX28DRAFT_2358 0.24 -0.5
2,378,069 - EX28DRAFT_2358 0.29 +0.5
2,378,069 - EX28DRAFT_2358 0.29 -2.3
2,378,228 + EX28DRAFT_2358 0.44 -1.2
2,378,229 - EX28DRAFT_2358 0.44 -0.4
2,378,351 + EX28DRAFT_2358 0.56 +0.5
2,378,474 - EX28DRAFT_2358 0.68 +0.5
2,378,474 - EX28DRAFT_2358 0.68 -0.5
2,378,670 - EX28DRAFT_2358 0.88 -2.9
2,378,744 + +0.2
2,378,745 - +1.0
2,378,801 + -2.1
2,378,822 + -0.0
2,378,822 + +0.6
2,378,823 - +0.1
2,378,853 + -0.7
2,378,853 + +0.4
2,378,853 + -2.4
2,378,854 - +0.5
2,378,855 + +1.0
2,378,856 - +0.8
2,378,856 - +0.2
2,378,863 + -0.7
2,378,872 + +0.0
2,378,872 + -1.2
2,378,909 + -2.9
2,378,914 + +0.8
2,378,915 - -0.4
2,379,282 - EX28DRAFT_2359 0.32 -3.5
2,379,282 - EX28DRAFT_2359 0.32 -0.7
2,379,314 + EX28DRAFT_2359 0.34 -0.8
2,379,315 - EX28DRAFT_2359 0.35 -3.8
2,380,014 + +0.2
2,380,025 - -0.8
2,380,101 + -0.2
2,380,101 + +0.7
2,380,151 + +0.6
2,380,197 + -1.2
2,380,200 - +0.2
2,380,215 + +1.2
2,380,352 + EX28DRAFT_2360 0.15 -2.5
2,380,352 + EX28DRAFT_2360 0.15 +1.7
2,380,466 + EX28DRAFT_2360 0.24 +1.2
2,380,467 - EX28DRAFT_2360 0.25 +0.5
2,380,895 + EX28DRAFT_2360 0.59 +0.9
2,380,896 - EX28DRAFT_2360 0.59 +0.0
2,380,929 - EX28DRAFT_2360 0.62 -2.2
2,381,023 - EX28DRAFT_2360 0.69 +0.0
2,381,096 + EX28DRAFT_2360 0.75 +0.9
2,381,096 + EX28DRAFT_2360 0.75 +0.1
2,381,097 - EX28DRAFT_2360 0.75 -1.6

Or see this region's nucleotide sequence