Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1994

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1993 and EX28DRAFT_1994 are separated by 13 nucleotidesEX28DRAFT_1994 and EX28DRAFT_1995 are separated by 12 nucleotides EX28DRAFT_1993: EX28DRAFT_1993 - integral membrane protein, PqiA family, at 1,994,427 to 1,995,680 _1993 EX28DRAFT_1994: EX28DRAFT_1994 - ATPase components of ABC transporters with duplicated ATPase domains, at 1,995,694 to 1,997,601 _1994 EX28DRAFT_1995: EX28DRAFT_1995 - Predicted N6-adenine-specific DNA methylase, at 1,997,614 to 1,999,722 _1995 Position (kb) 1995 1996 1997 1998Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1994.728 kb on - strand, within EX28DRAFT_1993at 1994.742 kb on - strand, within EX28DRAFT_1993at 1994.745 kb on - strand, within EX28DRAFT_1993at 1994.799 kb on + strand, within EX28DRAFT_1993at 1994.800 kb on - strand, within EX28DRAFT_1993at 1994.881 kb on + strand, within EX28DRAFT_1993at 1994.881 kb on + strand, within EX28DRAFT_1993at 1994.940 kb on + strand, within EX28DRAFT_1993at 1995.159 kb on - strand, within EX28DRAFT_1993at 1995.159 kb on - strand, within EX28DRAFT_1993at 1995.159 kb on - strand, within EX28DRAFT_1993at 1995.464 kb on + strand, within EX28DRAFT_1993at 1995.464 kb on + strand, within EX28DRAFT_1993at 1995.465 kb on - strand, within EX28DRAFT_1993at 1995.466 kb on + strand, within EX28DRAFT_1993at 1995.466 kb on + strand, within EX28DRAFT_1993at 1995.466 kb on + strand, within EX28DRAFT_1993at 1995.466 kb on + strand, within EX28DRAFT_1993at 1995.466 kb on + strand, within EX28DRAFT_1993at 1995.466 kb on + strand, within EX28DRAFT_1993at 1995.467 kb on - strand, within EX28DRAFT_1993at 1995.467 kb on - strand, within EX28DRAFT_1993at 1995.467 kb on - strand, within EX28DRAFT_1993at 1995.467 kb on - strand, within EX28DRAFT_1993at 1995.520 kb on + strand, within EX28DRAFT_1993at 1995.629 kb on + strandat 1995.646 kb on - strandat 1995.650 kb on + strandat 1995.651 kb on - strandat 1995.651 kb on - strandat 1995.680 kb on + strandat 1995.680 kb on + strandat 1995.680 kb on + strandat 1995.680 kb on + strandat 1995.680 kb on + strandat 1995.680 kb on + strandat 1995.680 kb on + strandat 1995.680 kb on + strandat 1995.680 kb on + strandat 1995.680 kb on + strandat 1995.681 kb on - strandat 1995.681 kb on - strandat 1995.681 kb on - strandat 1995.681 kb on - strandat 1995.681 kb on - strandat 1995.681 kb on - strandat 1995.681 kb on - strandat 1995.681 kb on - strandat 1995.686 kb on - strandat 1995.792 kb on + strandat 1995.794 kb on + strandat 1995.795 kb on - strandat 1995.795 kb on - strandat 1995.911 kb on + strand, within EX28DRAFT_1994at 1995.912 kb on - strand, within EX28DRAFT_1994at 1995.916 kb on + strand, within EX28DRAFT_1994at 1995.916 kb on + strand, within EX28DRAFT_1994at 1995.917 kb on - strand, within EX28DRAFT_1994at 1995.917 kb on - strand, within EX28DRAFT_1994at 1995.917 kb on - strand, within EX28DRAFT_1994at 1995.917 kb on - strand, within EX28DRAFT_1994at 1995.956 kb on - strand, within EX28DRAFT_1994at 1996.042 kb on + strand, within EX28DRAFT_1994at 1996.046 kb on + strand, within EX28DRAFT_1994at 1996.047 kb on - strand, within EX28DRAFT_1994at 1996.047 kb on - strand, within EX28DRAFT_1994at 1996.263 kb on + strand, within EX28DRAFT_1994at 1996.768 kb on - strand, within EX28DRAFT_1994at 1996.779 kb on + strand, within EX28DRAFT_1994at 1996.881 kb on - strand, within EX28DRAFT_1994at 1996.881 kb on - strand, within EX28DRAFT_1994at 1996.881 kb on - strand, within EX28DRAFT_1994at 1996.881 kb on - strand, within EX28DRAFT_1994at 1996.881 kb on - strand, within EX28DRAFT_1994at 1996.881 kb on - strand, within EX28DRAFT_1994at 1996.881 kb on - strand, within EX28DRAFT_1994at 1996.935 kb on + strand, within EX28DRAFT_1994at 1996.935 kb on + strand, within EX28DRAFT_1994at 1996.957 kb on - strand, within EX28DRAFT_1994at 1996.983 kb on + strand, within EX28DRAFT_1994at 1996.983 kb on + strand, within EX28DRAFT_1994at 1996.983 kb on + strand, within EX28DRAFT_1994at 1996.983 kb on + strand, within EX28DRAFT_1994at 1997.371 kb on - strand, within EX28DRAFT_1994at 1997.498 kb on - strandat 1997.526 kb on + strandat 1997.539 kb on - strandat 1997.590 kb on - strandat 1997.593 kb on + strandat 1997.594 kb on - strandat 1997.594 kb on - strandat 1997.603 kb on + strandat 1997.603 kb on + strandat 1997.641 kb on - strandat 1997.641 kb on - strandat 1997.720 kb on - strandat 1997.766 kb on + strandat 1997.766 kb on + strandat 1997.767 kb on - strandat 1997.767 kb on - strandat 1997.831 kb on - strand, within EX28DRAFT_1995at 1998.006 kb on - strand, within EX28DRAFT_1995at 1998.018 kb on + strand, within EX28DRAFT_1995at 1998.019 kb on - strand, within EX28DRAFT_1995at 1998.081 kb on - strand, within EX28DRAFT_1995at 1998.540 kb on - strand, within EX28DRAFT_1995at 1998.565 kb on - strand, within EX28DRAFT_1995at 1998.594 kb on - strand, within EX28DRAFT_1995

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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1,994,728 - EX28DRAFT_1993 0.24 +0.6
1,994,742 - EX28DRAFT_1993 0.25 -1.0
1,994,745 - EX28DRAFT_1993 0.25 +0.8
1,994,799 + EX28DRAFT_1993 0.30 +0.4
1,994,800 - EX28DRAFT_1993 0.30 +0.2
1,994,881 + EX28DRAFT_1993 0.36 -0.1
1,994,881 + EX28DRAFT_1993 0.36 +1.6
1,994,940 + EX28DRAFT_1993 0.41 -1.3
1,995,159 - EX28DRAFT_1993 0.58 +0.2
1,995,159 - EX28DRAFT_1993 0.58 +1.4
1,995,159 - EX28DRAFT_1993 0.58 +0.7
1,995,464 + EX28DRAFT_1993 0.83 +0.0
1,995,464 + EX28DRAFT_1993 0.83 +1.0
1,995,465 - EX28DRAFT_1993 0.83 +0.4
1,995,466 + EX28DRAFT_1993 0.83 -1.0
1,995,466 + EX28DRAFT_1993 0.83 +0.2
1,995,466 + EX28DRAFT_1993 0.83 -2.2
1,995,466 + EX28DRAFT_1993 0.83 +0.2
1,995,466 + EX28DRAFT_1993 0.83 +0.2
1,995,466 + EX28DRAFT_1993 0.83 -0.0
1,995,467 - EX28DRAFT_1993 0.83 +0.3
1,995,467 - EX28DRAFT_1993 0.83 +0.6
1,995,467 - EX28DRAFT_1993 0.83 +0.2
1,995,467 - EX28DRAFT_1993 0.83 -0.3
1,995,520 + EX28DRAFT_1993 0.87 +1.3
1,995,629 + -3.3
1,995,646 - +0.1
1,995,650 + +0.2
1,995,651 - +0.7
1,995,651 - +1.8
1,995,680 + +0.3
1,995,680 + +0.2
1,995,680 + -0.3
1,995,680 + -0.3
1,995,680 + +0.5
1,995,680 + -0.6
1,995,680 + -0.2
1,995,680 + -1.4
1,995,680 + -2.8
1,995,680 + +0.2
1,995,681 - -0.2
1,995,681 - -0.3
1,995,681 - +1.4
1,995,681 - -1.2
1,995,681 - -3.6
1,995,681 - +0.9
1,995,681 - -1.4
1,995,681 - +1.8
1,995,686 - -0.8
1,995,792 + -0.4
1,995,794 + +1.3
1,995,795 - -1.9
1,995,795 - +0.4
1,995,911 + EX28DRAFT_1994 0.11 +0.1
1,995,912 - EX28DRAFT_1994 0.11 +0.5
1,995,916 + EX28DRAFT_1994 0.12 -0.0
1,995,916 + EX28DRAFT_1994 0.12 -3.0
1,995,917 - EX28DRAFT_1994 0.12 -0.7
1,995,917 - EX28DRAFT_1994 0.12 -2.5
1,995,917 - EX28DRAFT_1994 0.12 -2.4
1,995,917 - EX28DRAFT_1994 0.12 -2.9
1,995,956 - EX28DRAFT_1994 0.14 -2.2
1,996,042 + EX28DRAFT_1994 0.18 -2.1
1,996,046 + EX28DRAFT_1994 0.18 +1.4
1,996,047 - EX28DRAFT_1994 0.19 -0.6
1,996,047 - EX28DRAFT_1994 0.19 +0.2
1,996,263 + EX28DRAFT_1994 0.30 -0.8
1,996,768 - EX28DRAFT_1994 0.56 -0.7
1,996,779 + EX28DRAFT_1994 0.57 -0.1
1,996,881 - EX28DRAFT_1994 0.62 +0.8
1,996,881 - EX28DRAFT_1994 0.62 -0.5
1,996,881 - EX28DRAFT_1994 0.62 -0.4
1,996,881 - EX28DRAFT_1994 0.62 +1.1
1,996,881 - EX28DRAFT_1994 0.62 +1.7
1,996,881 - EX28DRAFT_1994 0.62 -0.3
1,996,881 - EX28DRAFT_1994 0.62 +0.5
1,996,935 + EX28DRAFT_1994 0.65 -2.4
1,996,935 + EX28DRAFT_1994 0.65 -0.5
1,996,957 - EX28DRAFT_1994 0.66 +0.4
1,996,983 + EX28DRAFT_1994 0.68 +0.4
1,996,983 + EX28DRAFT_1994 0.68 +0.3
1,996,983 + EX28DRAFT_1994 0.68 +0.5
1,996,983 + EX28DRAFT_1994 0.68 -0.1
1,997,371 - EX28DRAFT_1994 0.88 -0.2
1,997,498 - -1.3
1,997,526 + +0.0
1,997,539 - -3.7
1,997,590 - +0.9
1,997,593 + +1.2
1,997,594 - -0.6
1,997,594 - +0.6
1,997,603 + +0.8
1,997,603 + -1.7
1,997,641 - +0.5
1,997,641 - -0.3
1,997,720 - -0.1
1,997,766 + -0.3
1,997,766 + -3.9
1,997,767 - -0.4
1,997,767 - +0.8
1,997,831 - EX28DRAFT_1995 0.10 -4.1
1,998,006 - EX28DRAFT_1995 0.19 +1.8
1,998,018 + EX28DRAFT_1995 0.19 -0.6
1,998,019 - EX28DRAFT_1995 0.19 +0.4
1,998,081 - EX28DRAFT_1995 0.22 -1.6
1,998,540 - EX28DRAFT_1995 0.44 -0.0
1,998,565 - EX28DRAFT_1995 0.45 +0.6
1,998,594 - EX28DRAFT_1995 0.46 +0.7

Or see this region's nucleotide sequence