Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1938

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1936 and EX28DRAFT_1937 overlap by 22 nucleotidesEX28DRAFT_1937 and EX28DRAFT_1938 are separated by 4 nucleotidesEX28DRAFT_1938 and EX28DRAFT_1939 are separated by 191 nucleotides EX28DRAFT_1936: EX28DRAFT_1936 - amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family, at 1,942,484 to 1,943,161 _1936 EX28DRAFT_1937: EX28DRAFT_1937 - amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family, at 1,943,140 to 1,943,805 _1937 EX28DRAFT_1938: EX28DRAFT_1938 - ABC-type amino acid transport/signal transduction systems, periplasmic component/domain, at 1,943,810 to 1,944,592 _1938 EX28DRAFT_1939: EX28DRAFT_1939 - transcriptional regulator, RpiR family, at 1,944,784 to 1,945,623 _1939 Position (kb) 1943 1944 1945Strain fitness (log2 ratio) -2 -1 0 1 2at 1942.854 kb on + strand, within EX28DRAFT_1936at 1942.854 kb on + strand, within EX28DRAFT_1936at 1942.854 kb on + strand, within EX28DRAFT_1936at 1942.973 kb on - strand, within EX28DRAFT_1936at 1942.973 kb on - strand, within EX28DRAFT_1936at 1942.975 kb on - strand, within EX28DRAFT_1936at 1942.975 kb on - strand, within EX28DRAFT_1936at 1943.114 kb on - strandat 1943.209 kb on + strand, within EX28DRAFT_1937at 1943.209 kb on + strand, within EX28DRAFT_1937at 1943.209 kb on + strand, within EX28DRAFT_1937at 1943.210 kb on - strand, within EX28DRAFT_1937at 1943.214 kb on - strand, within EX28DRAFT_1937at 1943.235 kb on - strand, within EX28DRAFT_1937at 1943.692 kb on + strand, within EX28DRAFT_1937at 1943.971 kb on + strand, within EX28DRAFT_1938at 1943.972 kb on - strand, within EX28DRAFT_1938at 1944.045 kb on + strand, within EX28DRAFT_1938at 1944.045 kb on + strand, within EX28DRAFT_1938at 1944.046 kb on - strand, within EX28DRAFT_1938at 1944.914 kb on + strand, within EX28DRAFT_1939at 1945.329 kb on + strand, within EX28DRAFT_1939at 1945.329 kb on + strand, within EX28DRAFT_1939at 1945.330 kb on - strand, within EX28DRAFT_1939at 1945.330 kb on - strand, within EX28DRAFT_1939at 1945.330 kb on - strand, within EX28DRAFT_1939at 1945.350 kb on + strand, within EX28DRAFT_1939at 1945.432 kb on - strand, within EX28DRAFT_1939at 1945.433 kb on + strand, within EX28DRAFT_1939at 1945.433 kb on + strand, within EX28DRAFT_1939at 1945.434 kb on - strand, within EX28DRAFT_1939at 1945.455 kb on + strand, within EX28DRAFT_1939

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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1,942,854 + EX28DRAFT_1936 0.55 -1.9
1,942,854 + EX28DRAFT_1936 0.55 -0.2
1,942,854 + EX28DRAFT_1936 0.55 -0.7
1,942,973 - EX28DRAFT_1936 0.72 -0.0
1,942,973 - EX28DRAFT_1936 0.72 +0.1
1,942,975 - EX28DRAFT_1936 0.72 -0.2
1,942,975 - EX28DRAFT_1936 0.72 -0.8
1,943,114 - -0.1
1,943,209 + EX28DRAFT_1937 0.10 -0.1
1,943,209 + EX28DRAFT_1937 0.10 +0.5
1,943,209 + EX28DRAFT_1937 0.10 -0.4
1,943,210 - EX28DRAFT_1937 0.11 -0.6
1,943,214 - EX28DRAFT_1937 0.11 -2.4
1,943,235 - EX28DRAFT_1937 0.14 +0.9
1,943,692 + EX28DRAFT_1937 0.83 +2.1
1,943,971 + EX28DRAFT_1938 0.21 -2.0
1,943,972 - EX28DRAFT_1938 0.21 -0.1
1,944,045 + EX28DRAFT_1938 0.30 -2.2
1,944,045 + EX28DRAFT_1938 0.30 +0.0
1,944,046 - EX28DRAFT_1938 0.30 -0.6
1,944,914 + EX28DRAFT_1939 0.15 +0.1
1,945,329 + EX28DRAFT_1939 0.65 +0.3
1,945,329 + EX28DRAFT_1939 0.65 -1.1
1,945,330 - EX28DRAFT_1939 0.65 -0.3
1,945,330 - EX28DRAFT_1939 0.65 +0.1
1,945,330 - EX28DRAFT_1939 0.65 -1.9
1,945,350 + EX28DRAFT_1939 0.67 +0.4
1,945,432 - EX28DRAFT_1939 0.77 +0.2
1,945,433 + EX28DRAFT_1939 0.77 +0.6
1,945,433 + EX28DRAFT_1939 0.77 +1.6
1,945,434 - EX28DRAFT_1939 0.77 +0.0
1,945,455 + EX28DRAFT_1939 0.80 +0.7

Or see this region's nucleotide sequence