Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1765

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1764 and EX28DRAFT_1765 are separated by 4 nucleotidesEX28DRAFT_1765 and EX28DRAFT_1766 are separated by 116 nucleotidesEX28DRAFT_1766 and EX28DRAFT_1767 are separated by 167 nucleotides EX28DRAFT_1764: EX28DRAFT_1764 - DNA topoisomerase III, bacteria and conjugative plasmid, at 1,778,453 to 1,780,360 _1764 EX28DRAFT_1765: EX28DRAFT_1765 - selenophosphate synthase (EC 2.7.9.3), at 1,780,365 to 1,781,408 _1765 EX28DRAFT_1766: EX28DRAFT_1766 - Nitroreductase, at 1,781,525 to 1,782,076 _1766 EX28DRAFT_1767: EX28DRAFT_1767 - signal peptide peptidase SppA, 67K type, at 1,782,244 to 1,784,100 _1767 Position (kb) 1780 1781 1782Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1779.379 kb on - strand, within EX28DRAFT_1764at 1779.379 kb on - strand, within EX28DRAFT_1764at 1779.379 kb on - strand, within EX28DRAFT_1764at 1779.379 kb on - strand, within EX28DRAFT_1764at 1779.379 kb on - strand, within EX28DRAFT_1764at 1779.392 kb on - strand, within EX28DRAFT_1764at 1779.403 kb on - strand, within EX28DRAFT_1764at 1779.525 kb on + strand, within EX28DRAFT_1764at 1779.526 kb on - strand, within EX28DRAFT_1764at 1779.724 kb on + strand, within EX28DRAFT_1764at 1779.724 kb on + strand, within EX28DRAFT_1764at 1779.725 kb on - strand, within EX28DRAFT_1764at 1780.201 kb on - strandat 1780.237 kb on + strandat 1780.237 kb on + strandat 1780.237 kb on + strandat 1780.237 kb on + strandat 1780.238 kb on - strandat 1780.238 kb on - strandat 1780.300 kb on + strandat 1780.568 kb on - strand, within EX28DRAFT_1765at 1780.616 kb on + strand, within EX28DRAFT_1765at 1780.617 kb on - strand, within EX28DRAFT_1765at 1780.618 kb on + strand, within EX28DRAFT_1765at 1780.619 kb on - strand, within EX28DRAFT_1765at 1780.619 kb on - strand, within EX28DRAFT_1765at 1780.619 kb on - strand, within EX28DRAFT_1765at 1780.619 kb on - strand, within EX28DRAFT_1765at 1780.619 kb on - strand, within EX28DRAFT_1765at 1780.850 kb on + strand, within EX28DRAFT_1765at 1780.985 kb on + strand, within EX28DRAFT_1765at 1780.986 kb on - strand, within EX28DRAFT_1765at 1780.986 kb on - strand, within EX28DRAFT_1765at 1780.986 kb on - strand, within EX28DRAFT_1765at 1780.986 kb on - strand, within EX28DRAFT_1765at 1781.198 kb on + strand, within EX28DRAFT_1765at 1781.199 kb on - strand, within EX28DRAFT_1765at 1781.238 kb on + strand, within EX28DRAFT_1765at 1781.238 kb on + strand, within EX28DRAFT_1765at 1781.238 kb on + strand, within EX28DRAFT_1765at 1781.239 kb on - strand, within EX28DRAFT_1765at 1781.239 kb on - strand, within EX28DRAFT_1765at 1781.239 kb on - strand, within EX28DRAFT_1765at 1781.377 kb on + strandat 1781.441 kb on + strandat 1781.463 kb on + strandat 1781.464 kb on - strandat 1781.464 kb on - strandat 1781.467 kb on + strandat 1781.468 kb on - strandat 1781.468 kb on - strandat 1781.468 kb on - strandat 1781.468 kb on - strandat 1781.582 kb on - strand, within EX28DRAFT_1766at 1781.620 kb on + strand, within EX28DRAFT_1766at 1781.930 kb on - strand, within EX28DRAFT_1766at 1782.180 kb on - strandat 1782.196 kb on - strandat 1782.241 kb on + strandat 1782.241 kb on + strandat 1782.241 kb on + strandat 1782.242 kb on - strandat 1782.279 kb on + strandat 1782.376 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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1,779,379 - EX28DRAFT_1764 0.49 -0.9
1,779,379 - EX28DRAFT_1764 0.49 +3.2
1,779,379 - EX28DRAFT_1764 0.49 -0.4
1,779,379 - EX28DRAFT_1764 0.49 +0.5
1,779,379 - EX28DRAFT_1764 0.49 -0.3
1,779,392 - EX28DRAFT_1764 0.49 +0.2
1,779,403 - EX28DRAFT_1764 0.50 -0.9
1,779,525 + EX28DRAFT_1764 0.56 +0.9
1,779,526 - EX28DRAFT_1764 0.56 +0.9
1,779,724 + EX28DRAFT_1764 0.67 -2.8
1,779,724 + EX28DRAFT_1764 0.67 +0.2
1,779,725 - EX28DRAFT_1764 0.67 +1.2
1,780,201 - -3.0
1,780,237 + -0.1
1,780,237 + +0.1
1,780,237 + -0.5
1,780,237 + -0.8
1,780,238 - -0.1
1,780,238 - -0.8
1,780,300 + +0.7
1,780,568 - EX28DRAFT_1765 0.19 -2.3
1,780,616 + EX28DRAFT_1765 0.24 -1.2
1,780,617 - EX28DRAFT_1765 0.24 +0.5
1,780,618 + EX28DRAFT_1765 0.24 -2.5
1,780,619 - EX28DRAFT_1765 0.24 +0.0
1,780,619 - EX28DRAFT_1765 0.24 +1.9
1,780,619 - EX28DRAFT_1765 0.24 -0.5
1,780,619 - EX28DRAFT_1765 0.24 -0.1
1,780,619 - EX28DRAFT_1765 0.24 -1.3
1,780,850 + EX28DRAFT_1765 0.46 -0.8
1,780,985 + EX28DRAFT_1765 0.59 -0.3
1,780,986 - EX28DRAFT_1765 0.59 -3.0
1,780,986 - EX28DRAFT_1765 0.59 -0.2
1,780,986 - EX28DRAFT_1765 0.59 -0.6
1,780,986 - EX28DRAFT_1765 0.59 -0.7
1,781,198 + EX28DRAFT_1765 0.80 +0.4
1,781,199 - EX28DRAFT_1765 0.80 -1.8
1,781,238 + EX28DRAFT_1765 0.84 +1.1
1,781,238 + EX28DRAFT_1765 0.84 -1.4
1,781,238 + EX28DRAFT_1765 0.84 +0.1
1,781,239 - EX28DRAFT_1765 0.84 +0.4
1,781,239 - EX28DRAFT_1765 0.84 -0.9
1,781,239 - EX28DRAFT_1765 0.84 -0.4
1,781,377 + -0.7
1,781,441 + -3.1
1,781,463 + +1.3
1,781,464 - -0.1
1,781,464 - -0.1
1,781,467 + -2.0
1,781,468 - +0.4
1,781,468 - +0.0
1,781,468 - -1.2
1,781,468 - -0.7
1,781,582 - EX28DRAFT_1766 0.10 -0.4
1,781,620 + EX28DRAFT_1766 0.17 -2.3
1,781,930 - EX28DRAFT_1766 0.73 +0.0
1,782,180 - -3.0
1,782,196 - -2.3
1,782,241 + +0.0
1,782,241 + +0.3
1,782,241 + +0.5
1,782,242 - +1.0
1,782,279 + +3.1
1,782,376 - -0.7

Or see this region's nucleotide sequence