Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1753

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1752 and EX28DRAFT_1753 are separated by 433 nucleotidesEX28DRAFT_1753 and EX28DRAFT_1754 are separated by 6 nucleotidesEX28DRAFT_1754 and EX28DRAFT_1755 are separated by 6 nucleotides EX28DRAFT_1752: EX28DRAFT_1752 - transaminase, acetylornithine/succinylornithine family/succinylornithine transaminase family, at 1,767,074 to 1,768,294 _1752 EX28DRAFT_1753: EX28DRAFT_1753 - exodeoxyribonuclease III, at 1,768,728 to 1,769,534 _1753 EX28DRAFT_1754: EX28DRAFT_1754 - Uncharacterized conserved protein, at 1,769,541 to 1,770,224 _1754 EX28DRAFT_1755: EX28DRAFT_1755 - ABC-type uncharacterized transport system, periplasmic component, at 1,770,231 to 1,771,400 _1755 Position (kb) 1768 1769 1770Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1767.786 kb on + strand, within EX28DRAFT_1752at 1767.835 kb on - strand, within EX28DRAFT_1752at 1767.989 kb on - strand, within EX28DRAFT_1752at 1768.173 kb on + strandat 1768.174 kb on - strandat 1768.174 kb on - strandat 1768.243 kb on - strandat 1768.280 kb on - strandat 1768.294 kb on + strandat 1768.295 kb on - strandat 1768.362 kb on + strandat 1768.402 kb on - strandat 1768.536 kb on + strandat 1768.621 kb on + strandat 1768.639 kb on - strandat 1768.651 kb on + strandat 1768.745 kb on + strandat 1768.847 kb on + strand, within EX28DRAFT_1753at 1768.847 kb on + strand, within EX28DRAFT_1753at 1768.847 kb on + strand, within EX28DRAFT_1753at 1768.847 kb on + strand, within EX28DRAFT_1753at 1768.848 kb on - strand, within EX28DRAFT_1753at 1768.848 kb on - strand, within EX28DRAFT_1753at 1768.848 kb on - strand, within EX28DRAFT_1753at 1768.848 kb on - strand, within EX28DRAFT_1753at 1768.893 kb on + strand, within EX28DRAFT_1753at 1768.893 kb on + strand, within EX28DRAFT_1753at 1768.893 kb on + strand, within EX28DRAFT_1753at 1768.894 kb on - strand, within EX28DRAFT_1753at 1768.894 kb on - strand, within EX28DRAFT_1753at 1769.053 kb on - strand, within EX28DRAFT_1753at 1769.131 kb on - strand, within EX28DRAFT_1753at 1769.186 kb on + strand, within EX28DRAFT_1753at 1769.319 kb on - strand, within EX28DRAFT_1753at 1769.533 kb on - strandat 1769.533 kb on - strandat 1769.564 kb on - strandat 1769.588 kb on + strandat 1769.588 kb on + strandat 1769.639 kb on + strand, within EX28DRAFT_1754at 1769.640 kb on - strand, within EX28DRAFT_1754at 1769.668 kb on - strand, within EX28DRAFT_1754at 1769.715 kb on + strand, within EX28DRAFT_1754at 1769.716 kb on - strand, within EX28DRAFT_1754at 1769.716 kb on - strand, within EX28DRAFT_1754at 1769.716 kb on - strand, within EX28DRAFT_1754at 1770.022 kb on + strand, within EX28DRAFT_1754at 1770.023 kb on - strand, within EX28DRAFT_1754at 1770.023 kb on - strand, within EX28DRAFT_1754at 1770.023 kb on - strand, within EX28DRAFT_1754at 1770.024 kb on + strand, within EX28DRAFT_1754at 1770.143 kb on - strand, within EX28DRAFT_1754at 1770.152 kb on + strand, within EX28DRAFT_1754at 1770.158 kb on - strandat 1770.158 kb on - strandat 1770.215 kb on + strandat 1770.230 kb on + strandat 1770.500 kb on + strand, within EX28DRAFT_1755

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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1,767,786 + EX28DRAFT_1752 0.58 -0.5
1,767,835 - EX28DRAFT_1752 0.62 +0.2
1,767,989 - EX28DRAFT_1752 0.75 +0.8
1,768,173 + +1.2
1,768,174 - -2.4
1,768,174 - +0.2
1,768,243 - -1.1
1,768,280 - +0.1
1,768,294 + -0.6
1,768,295 - +1.2
1,768,362 + -0.4
1,768,402 - +0.6
1,768,536 + +1.5
1,768,621 + -2.3
1,768,639 - -1.0
1,768,651 + -0.7
1,768,745 + +1.2
1,768,847 + EX28DRAFT_1753 0.15 -2.6
1,768,847 + EX28DRAFT_1753 0.15 -0.9
1,768,847 + EX28DRAFT_1753 0.15 -0.8
1,768,847 + EX28DRAFT_1753 0.15 +1.0
1,768,848 - EX28DRAFT_1753 0.15 -0.3
1,768,848 - EX28DRAFT_1753 0.15 -0.5
1,768,848 - EX28DRAFT_1753 0.15 -1.8
1,768,848 - EX28DRAFT_1753 0.15 +0.0
1,768,893 + EX28DRAFT_1753 0.20 -1.0
1,768,893 + EX28DRAFT_1753 0.20 -1.0
1,768,893 + EX28DRAFT_1753 0.20 -3.1
1,768,894 - EX28DRAFT_1753 0.21 -3.6
1,768,894 - EX28DRAFT_1753 0.21 -1.2
1,769,053 - EX28DRAFT_1753 0.40 -0.6
1,769,131 - EX28DRAFT_1753 0.50 -2.3
1,769,186 + EX28DRAFT_1753 0.57 -0.2
1,769,319 - EX28DRAFT_1753 0.73 -1.6
1,769,533 - -0.0
1,769,533 - -0.7
1,769,564 - -2.2
1,769,588 + +0.5
1,769,588 + +2.4
1,769,639 + EX28DRAFT_1754 0.14 -0.5
1,769,640 - EX28DRAFT_1754 0.14 +0.4
1,769,668 - EX28DRAFT_1754 0.19 -0.5
1,769,715 + EX28DRAFT_1754 0.25 +3.5
1,769,716 - EX28DRAFT_1754 0.26 +0.1
1,769,716 - EX28DRAFT_1754 0.26 -0.3
1,769,716 - EX28DRAFT_1754 0.26 +0.4
1,770,022 + EX28DRAFT_1754 0.70 -0.6
1,770,023 - EX28DRAFT_1754 0.70 +0.4
1,770,023 - EX28DRAFT_1754 0.70 +0.2
1,770,023 - EX28DRAFT_1754 0.70 +0.3
1,770,024 + EX28DRAFT_1754 0.71 +0.1
1,770,143 - EX28DRAFT_1754 0.88 +0.6
1,770,152 + EX28DRAFT_1754 0.89 -0.1
1,770,158 - +0.2
1,770,158 - +0.4
1,770,215 + -2.6
1,770,230 + -0.0
1,770,500 + EX28DRAFT_1755 0.23 +1.7

Or see this region's nucleotide sequence