Experiment: M9 with sucrose and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1752 and EX28DRAFT_1753 are separated by 433 nucleotides EX28DRAFT_1753 and EX28DRAFT_1754 are separated by 6 nucleotides EX28DRAFT_1754 and EX28DRAFT_1755 are separated by 6 nucleotides
EX28DRAFT_1752: EX28DRAFT_1752 - transaminase, acetylornithine/succinylornithine family/succinylornithine transaminase family, at 1,767,074 to 1,768,294
_1752
EX28DRAFT_1753: EX28DRAFT_1753 - exodeoxyribonuclease III, at 1,768,728 to 1,769,534
_1753
EX28DRAFT_1754: EX28DRAFT_1754 - Uncharacterized conserved protein, at 1,769,541 to 1,770,224
_1754
EX28DRAFT_1755: EX28DRAFT_1755 - ABC-type uncharacterized transport system, periplasmic component, at 1,770,231 to 1,771,400
_1755
Position (kb)
1768
1769
1770 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1767.786 kb on + strand, within EX28DRAFT_1752 at 1767.835 kb on - strand, within EX28DRAFT_1752 at 1767.989 kb on - strand, within EX28DRAFT_1752 at 1768.173 kb on + strand at 1768.174 kb on - strand at 1768.174 kb on - strand at 1768.243 kb on - strand at 1768.280 kb on - strand at 1768.294 kb on + strand at 1768.295 kb on - strand at 1768.362 kb on + strand at 1768.402 kb on - strand at 1768.536 kb on + strand at 1768.621 kb on + strand at 1768.639 kb on - strand at 1768.651 kb on + strand at 1768.745 kb on + strand at 1768.847 kb on + strand, within EX28DRAFT_1753 at 1768.847 kb on + strand, within EX28DRAFT_1753 at 1768.847 kb on + strand, within EX28DRAFT_1753 at 1768.847 kb on + strand, within EX28DRAFT_1753 at 1768.848 kb on - strand, within EX28DRAFT_1753 at 1768.848 kb on - strand, within EX28DRAFT_1753 at 1768.848 kb on - strand, within EX28DRAFT_1753 at 1768.848 kb on - strand, within EX28DRAFT_1753 at 1768.893 kb on + strand, within EX28DRAFT_1753 at 1768.893 kb on + strand, within EX28DRAFT_1753 at 1768.893 kb on + strand, within EX28DRAFT_1753 at 1768.894 kb on - strand, within EX28DRAFT_1753 at 1768.894 kb on - strand, within EX28DRAFT_1753 at 1769.053 kb on - strand, within EX28DRAFT_1753 at 1769.131 kb on - strand, within EX28DRAFT_1753 at 1769.186 kb on + strand, within EX28DRAFT_1753 at 1769.319 kb on - strand, within EX28DRAFT_1753 at 1769.533 kb on - strand at 1769.533 kb on - strand at 1769.564 kb on - strand at 1769.588 kb on + strand at 1769.588 kb on + strand at 1769.639 kb on + strand, within EX28DRAFT_1754 at 1769.640 kb on - strand, within EX28DRAFT_1754 at 1769.668 kb on - strand, within EX28DRAFT_1754 at 1769.715 kb on + strand, within EX28DRAFT_1754 at 1769.716 kb on - strand, within EX28DRAFT_1754 at 1769.716 kb on - strand, within EX28DRAFT_1754 at 1769.716 kb on - strand, within EX28DRAFT_1754 at 1770.022 kb on + strand, within EX28DRAFT_1754 at 1770.023 kb on - strand, within EX28DRAFT_1754 at 1770.023 kb on - strand, within EX28DRAFT_1754 at 1770.023 kb on - strand, within EX28DRAFT_1754 at 1770.024 kb on + strand, within EX28DRAFT_1754 at 1770.143 kb on - strand, within EX28DRAFT_1754 at 1770.152 kb on + strand, within EX28DRAFT_1754 at 1770.158 kb on - strand at 1770.158 kb on - strand at 1770.215 kb on + strand at 1770.230 kb on + strand at 1770.500 kb on + strand, within EX28DRAFT_1755
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM remove 1,767,786 + EX28DRAFT_1752 0.58 -0.5 1,767,835 - EX28DRAFT_1752 0.62 +0.2 1,767,989 - EX28DRAFT_1752 0.75 +0.8 1,768,173 + +1.2 1,768,174 - -2.4 1,768,174 - +0.2 1,768,243 - -1.1 1,768,280 - +0.1 1,768,294 + -0.6 1,768,295 - +1.2 1,768,362 + -0.4 1,768,402 - +0.6 1,768,536 + +1.5 1,768,621 + -2.3 1,768,639 - -1.0 1,768,651 + -0.7 1,768,745 + +1.2 1,768,847 + EX28DRAFT_1753 0.15 -2.6 1,768,847 + EX28DRAFT_1753 0.15 -0.9 1,768,847 + EX28DRAFT_1753 0.15 -0.8 1,768,847 + EX28DRAFT_1753 0.15 +1.0 1,768,848 - EX28DRAFT_1753 0.15 -0.3 1,768,848 - EX28DRAFT_1753 0.15 -0.5 1,768,848 - EX28DRAFT_1753 0.15 -1.8 1,768,848 - EX28DRAFT_1753 0.15 +0.0 1,768,893 + EX28DRAFT_1753 0.20 -1.0 1,768,893 + EX28DRAFT_1753 0.20 -1.0 1,768,893 + EX28DRAFT_1753 0.20 -3.1 1,768,894 - EX28DRAFT_1753 0.21 -3.6 1,768,894 - EX28DRAFT_1753 0.21 -1.2 1,769,053 - EX28DRAFT_1753 0.40 -0.6 1,769,131 - EX28DRAFT_1753 0.50 -2.3 1,769,186 + EX28DRAFT_1753 0.57 -0.2 1,769,319 - EX28DRAFT_1753 0.73 -1.6 1,769,533 - -0.0 1,769,533 - -0.7 1,769,564 - -2.2 1,769,588 + +0.5 1,769,588 + +2.4 1,769,639 + EX28DRAFT_1754 0.14 -0.5 1,769,640 - EX28DRAFT_1754 0.14 +0.4 1,769,668 - EX28DRAFT_1754 0.19 -0.5 1,769,715 + EX28DRAFT_1754 0.25 +3.5 1,769,716 - EX28DRAFT_1754 0.26 +0.1 1,769,716 - EX28DRAFT_1754 0.26 -0.3 1,769,716 - EX28DRAFT_1754 0.26 +0.4 1,770,022 + EX28DRAFT_1754 0.70 -0.6 1,770,023 - EX28DRAFT_1754 0.70 +0.4 1,770,023 - EX28DRAFT_1754 0.70 +0.2 1,770,023 - EX28DRAFT_1754 0.70 +0.3 1,770,024 + EX28DRAFT_1754 0.71 +0.1 1,770,143 - EX28DRAFT_1754 0.88 +0.6 1,770,152 + EX28DRAFT_1754 0.89 -0.1 1,770,158 - +0.2 1,770,158 - +0.4 1,770,215 + -2.6 1,770,230 + -0.0 1,770,500 + EX28DRAFT_1755 0.23 +1.7
Or see this region's nucleotide sequence