Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1727

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1726 and EX28DRAFT_1727 are separated by 701 nucleotidesEX28DRAFT_1727 and EX28DRAFT_1728 are separated by 229 nucleotides EX28DRAFT_1726: EX28DRAFT_1726 - threonyl-tRNA synthetase (EC 6.1.1.3), at 1,740,186 to 1,742,114 _1726 EX28DRAFT_1727: EX28DRAFT_1727 - Putative salt-induced outer membrane protein, at 1,742,816 to 1,743,640 _1727 EX28DRAFT_1728: EX28DRAFT_1728 - hexose kinase, 1-phosphofructokinase family, at 1,743,870 to 1,744,802 _1728 Position (kb) 1742 1743 1744Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1742.256 kb on - strandat 1742.281 kb on - strandat 1742.399 kb on + strandat 1742.492 kb on + strandat 1742.493 kb on - strandat 1742.493 kb on - strandat 1742.493 kb on - strandat 1742.577 kb on - strandat 1742.622 kb on + strandat 1742.623 kb on - strandat 1742.623 kb on - strandat 1742.705 kb on - strandat 1742.798 kb on - strandat 1742.814 kb on + strandat 1742.815 kb on - strandat 1742.815 kb on - strandat 1742.818 kb on - strandat 1742.825 kb on - strandat 1742.825 kb on - strandat 1742.904 kb on + strand, within EX28DRAFT_1727at 1742.904 kb on + strand, within EX28DRAFT_1727at 1743.036 kb on + strand, within EX28DRAFT_1727at 1743.036 kb on + strand, within EX28DRAFT_1727at 1743.037 kb on - strand, within EX28DRAFT_1727at 1743.037 kb on - strand, within EX28DRAFT_1727at 1743.202 kb on - strand, within EX28DRAFT_1727at 1743.237 kb on + strand, within EX28DRAFT_1727at 1743.244 kb on - strand, within EX28DRAFT_1727at 1743.259 kb on - strand, within EX28DRAFT_1727at 1743.266 kb on - strand, within EX28DRAFT_1727at 1743.282 kb on + strand, within EX28DRAFT_1727at 1743.283 kb on - strand, within EX28DRAFT_1727at 1743.374 kb on - strand, within EX28DRAFT_1727at 1743.423 kb on + strand, within EX28DRAFT_1727at 1743.592 kb on - strandat 1743.687 kb on + strandat 1743.687 kb on + strandat 1743.692 kb on + strandat 1743.692 kb on + strandat 1743.752 kb on - strandat 1743.753 kb on + strandat 1743.754 kb on - strandat 1743.808 kb on + strandat 1743.808 kb on + strandat 1743.855 kb on + strandat 1743.879 kb on - strandat 1743.883 kb on - strandat 1743.883 kb on - strandat 1743.885 kb on - strandat 1744.252 kb on + strand, within EX28DRAFT_1728at 1744.442 kb on - strand, within EX28DRAFT_1728at 1744.442 kb on - strand, within EX28DRAFT_1728at 1744.532 kb on - strand, within EX28DRAFT_1728at 1744.532 kb on - strand, within EX28DRAFT_1728

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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1,742,256 - +0.3
1,742,281 - +0.2
1,742,399 + +2.4
1,742,492 + +0.4
1,742,493 - -2.6
1,742,493 - +0.4
1,742,493 - -0.6
1,742,577 - +0.9
1,742,622 + +0.6
1,742,623 - -0.9
1,742,623 - +0.8
1,742,705 - -0.3
1,742,798 - -3.3
1,742,814 + -0.4
1,742,815 - -0.8
1,742,815 - +0.9
1,742,818 - -0.9
1,742,825 - +0.3
1,742,825 - +1.3
1,742,904 + EX28DRAFT_1727 0.11 +1.8
1,742,904 + EX28DRAFT_1727 0.11 +0.7
1,743,036 + EX28DRAFT_1727 0.27 +0.4
1,743,036 + EX28DRAFT_1727 0.27 +0.6
1,743,037 - EX28DRAFT_1727 0.27 +0.0
1,743,037 - EX28DRAFT_1727 0.27 +0.4
1,743,202 - EX28DRAFT_1727 0.47 +0.2
1,743,237 + EX28DRAFT_1727 0.51 +0.9
1,743,244 - EX28DRAFT_1727 0.52 -4.1
1,743,259 - EX28DRAFT_1727 0.54 +0.4
1,743,266 - EX28DRAFT_1727 0.55 +0.8
1,743,282 + EX28DRAFT_1727 0.56 -0.8
1,743,283 - EX28DRAFT_1727 0.57 -0.3
1,743,374 - EX28DRAFT_1727 0.68 +0.2
1,743,423 + EX28DRAFT_1727 0.74 +0.1
1,743,592 - -0.2
1,743,687 + -0.4
1,743,687 + +1.6
1,743,692 + +0.4
1,743,692 + +1.5
1,743,752 - -0.6
1,743,753 + -0.5
1,743,754 - +1.1
1,743,808 + +0.1
1,743,808 + +2.6
1,743,855 + -1.8
1,743,879 - +0.8
1,743,883 - -0.3
1,743,883 - -3.1
1,743,885 - -0.2
1,744,252 + EX28DRAFT_1728 0.41 +2.6
1,744,442 - EX28DRAFT_1728 0.61 +0.4
1,744,442 - EX28DRAFT_1728 0.61 +1.4
1,744,532 - EX28DRAFT_1728 0.71 +1.1
1,744,532 - EX28DRAFT_1728 0.71 -0.4

Or see this region's nucleotide sequence