Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1515

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1514 and EX28DRAFT_1515 are separated by 77 nucleotidesEX28DRAFT_1515 and EX28DRAFT_1516 are separated by 29 nucleotidesEX28DRAFT_1516 and EX28DRAFT_1517 are separated by 124 nucleotides EX28DRAFT_1514: EX28DRAFT_1514 - phenazine biosynthesis protein PhzF family, at 1,528,213 to 1,529,106 _1514 EX28DRAFT_1515: EX28DRAFT_1515 - HNH endonuclease, at 1,529,184 to 1,529,531 _1515 EX28DRAFT_1516: EX28DRAFT_1516 - Outer membrane protein V, at 1,529,561 to 1,530,346 _1516 EX28DRAFT_1517: EX28DRAFT_1517 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 1,530,471 to 1,531,166 _1517 Position (kb) 1529 1530Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1528.184 kb on + strandat 1528.184 kb on + strandat 1528.184 kb on + strandat 1528.185 kb on - strandat 1528.185 kb on - strandat 1528.225 kb on + strandat 1528.225 kb on + strandat 1528.225 kb on + strandat 1528.226 kb on - strandat 1528.459 kb on + strand, within EX28DRAFT_1514at 1528.460 kb on - strand, within EX28DRAFT_1514at 1528.460 kb on - strand, within EX28DRAFT_1514at 1528.464 kb on - strand, within EX28DRAFT_1514at 1528.544 kb on + strand, within EX28DRAFT_1514at 1528.682 kb on + strand, within EX28DRAFT_1514at 1528.686 kb on + strand, within EX28DRAFT_1514at 1528.686 kb on + strand, within EX28DRAFT_1514at 1528.686 kb on + strand, within EX28DRAFT_1514at 1528.686 kb on + strand, within EX28DRAFT_1514at 1528.686 kb on + strand, within EX28DRAFT_1514at 1528.686 kb on + strand, within EX28DRAFT_1514at 1528.687 kb on - strand, within EX28DRAFT_1514at 1528.687 kb on - strand, within EX28DRAFT_1514at 1528.687 kb on - strand, within EX28DRAFT_1514at 1528.687 kb on - strand, within EX28DRAFT_1514at 1528.687 kb on - strand, within EX28DRAFT_1514at 1528.687 kb on - strand, within EX28DRAFT_1514at 1528.687 kb on - strand, within EX28DRAFT_1514at 1528.687 kb on - strand, within EX28DRAFT_1514at 1528.695 kb on + strand, within EX28DRAFT_1514at 1528.772 kb on + strand, within EX28DRAFT_1514at 1528.773 kb on - strand, within EX28DRAFT_1514at 1528.819 kb on + strand, within EX28DRAFT_1514at 1528.825 kb on + strand, within EX28DRAFT_1514at 1528.825 kb on + strand, within EX28DRAFT_1514at 1528.826 kb on - strand, within EX28DRAFT_1514at 1528.826 kb on - strand, within EX28DRAFT_1514at 1528.826 kb on - strand, within EX28DRAFT_1514at 1528.826 kb on - strand, within EX28DRAFT_1514at 1528.826 kb on - strand, within EX28DRAFT_1514at 1528.878 kb on + strand, within EX28DRAFT_1514at 1528.879 kb on - strand, within EX28DRAFT_1514at 1529.147 kb on + strandat 1529.148 kb on - strandat 1529.173 kb on + strandat 1529.242 kb on + strand, within EX28DRAFT_1515at 1529.289 kb on + strand, within EX28DRAFT_1515at 1529.290 kb on - strand, within EX28DRAFT_1515at 1529.337 kb on - strand, within EX28DRAFT_1515at 1529.409 kb on + strand, within EX28DRAFT_1515at 1529.503 kb on + strandat 1529.529 kb on + strandat 1529.563 kb on - strandat 1529.651 kb on - strand, within EX28DRAFT_1516at 1529.653 kb on - strand, within EX28DRAFT_1516at 1529.724 kb on + strand, within EX28DRAFT_1516at 1529.724 kb on + strand, within EX28DRAFT_1516at 1529.725 kb on - strand, within EX28DRAFT_1516at 1529.858 kb on - strand, within EX28DRAFT_1516at 1529.893 kb on - strand, within EX28DRAFT_1516at 1530.094 kb on - strand, within EX28DRAFT_1516at 1530.320 kb on - strandat 1530.320 kb on - strandat 1530.320 kb on - strandat 1530.321 kb on + strandat 1530.321 kb on + strandat 1530.321 kb on + strandat 1530.321 kb on + strandat 1530.321 kb on + strandat 1530.322 kb on - strandat 1530.322 kb on - strandat 1530.322 kb on - strandat 1530.322 kb on - strandat 1530.322 kb on - strandat 1530.322 kb on - strandat 1530.322 kb on - strandat 1530.322 kb on - strandat 1530.346 kb on + strandat 1530.346 kb on + strandat 1530.346 kb on + strandat 1530.347 kb on - strandat 1530.347 kb on - strandat 1530.411 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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1,528,184 + -1.8
1,528,184 + +1.1
1,528,184 + -1.7
1,528,185 - -1.0
1,528,185 - -1.4
1,528,225 + +0.7
1,528,225 + +1.1
1,528,225 + -0.3
1,528,226 - +0.2
1,528,459 + EX28DRAFT_1514 0.28 -0.9
1,528,460 - EX28DRAFT_1514 0.28 -0.5
1,528,460 - EX28DRAFT_1514 0.28 -3.1
1,528,464 - EX28DRAFT_1514 0.28 -2.5
1,528,544 + EX28DRAFT_1514 0.37 +0.4
1,528,682 + EX28DRAFT_1514 0.52 +0.7
1,528,686 + EX28DRAFT_1514 0.53 +1.9
1,528,686 + EX28DRAFT_1514 0.53 +0.9
1,528,686 + EX28DRAFT_1514 0.53 -1.8
1,528,686 + EX28DRAFT_1514 0.53 +0.0
1,528,686 + EX28DRAFT_1514 0.53 +1.0
1,528,686 + EX28DRAFT_1514 0.53 +0.1
1,528,687 - EX28DRAFT_1514 0.53 -0.3
1,528,687 - EX28DRAFT_1514 0.53 +0.2
1,528,687 - EX28DRAFT_1514 0.53 +1.0
1,528,687 - EX28DRAFT_1514 0.53 +0.8
1,528,687 - EX28DRAFT_1514 0.53 -0.9
1,528,687 - EX28DRAFT_1514 0.53 +1.1
1,528,687 - EX28DRAFT_1514 0.53 +0.9
1,528,687 - EX28DRAFT_1514 0.53 +1.4
1,528,695 + EX28DRAFT_1514 0.54 -0.9
1,528,772 + EX28DRAFT_1514 0.63 -2.5
1,528,773 - EX28DRAFT_1514 0.63 +0.3
1,528,819 + EX28DRAFT_1514 0.68 +1.2
1,528,825 + EX28DRAFT_1514 0.68 -0.1
1,528,825 + EX28DRAFT_1514 0.68 -0.7
1,528,826 - EX28DRAFT_1514 0.69 +2.1
1,528,826 - EX28DRAFT_1514 0.69 +0.8
1,528,826 - EX28DRAFT_1514 0.69 -3.1
1,528,826 - EX28DRAFT_1514 0.69 -2.0
1,528,826 - EX28DRAFT_1514 0.69 -0.8
1,528,878 + EX28DRAFT_1514 0.74 +0.7
1,528,879 - EX28DRAFT_1514 0.74 -0.2
1,529,147 + +0.9
1,529,148 - +0.6
1,529,173 + +1.1
1,529,242 + EX28DRAFT_1515 0.17 +1.0
1,529,289 + EX28DRAFT_1515 0.30 +0.3
1,529,290 - EX28DRAFT_1515 0.30 +0.4
1,529,337 - EX28DRAFT_1515 0.44 -0.5
1,529,409 + EX28DRAFT_1515 0.65 +0.4
1,529,503 + -2.7
1,529,529 + -2.8
1,529,563 - +0.1
1,529,651 - EX28DRAFT_1516 0.11 +1.4
1,529,653 - EX28DRAFT_1516 0.12 -1.2
1,529,724 + EX28DRAFT_1516 0.21 -0.1
1,529,724 + EX28DRAFT_1516 0.21 -0.6
1,529,725 - EX28DRAFT_1516 0.21 +0.4
1,529,858 - EX28DRAFT_1516 0.38 -0.1
1,529,893 - EX28DRAFT_1516 0.42 +0.4
1,530,094 - EX28DRAFT_1516 0.68 -0.9
1,530,320 - +0.7
1,530,320 - -0.5
1,530,320 - +0.1
1,530,321 + +0.5
1,530,321 + -0.7
1,530,321 + -0.2
1,530,321 + -3.7
1,530,321 + -0.2
1,530,322 - +0.9
1,530,322 - +0.2
1,530,322 - -2.1
1,530,322 - +0.9
1,530,322 - +0.4
1,530,322 - +0.5
1,530,322 - +0.9
1,530,322 - -0.8
1,530,346 + -0.8
1,530,346 + -0.1
1,530,346 + -1.7
1,530,347 - -0.6
1,530,347 - +0.6
1,530,411 - +0.6

Or see this region's nucleotide sequence