Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1492

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1491 and EX28DRAFT_1492 overlap by 66 nucleotidesEX28DRAFT_1492 and EX28DRAFT_1493 are separated by 130 nucleotides EX28DRAFT_1491: EX28DRAFT_1491 - Chloride channel protein EriC, at 1,505,054 to 1,506,364 _1491 EX28DRAFT_1492: EX28DRAFT_1492 - dethiobiotin synthase, at 1,506,299 to 1,506,994 _1492 EX28DRAFT_1493: EX28DRAFT_1493 - Transcriptional regulator/sugar kinase, at 1,507,125 to 1,508,345 _1493 Position (kb) 1506 1507Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 1505.342 kb on + strand, within EX28DRAFT_1491at 1505.570 kb on + strand, within EX28DRAFT_1491at 1505.571 kb on - strand, within EX28DRAFT_1491at 1506.059 kb on - strand, within EX28DRAFT_1491at 1506.174 kb on + strand, within EX28DRAFT_1491at 1506.202 kb on + strand, within EX28DRAFT_1491at 1506.202 kb on + strand, within EX28DRAFT_1491at 1506.202 kb on + strand, within EX28DRAFT_1491at 1506.203 kb on - strand, within EX28DRAFT_1491at 1506.354 kb on + strandat 1506.355 kb on - strandat 1506.724 kb on + strand, within EX28DRAFT_1492at 1506.725 kb on - strand, within EX28DRAFT_1492at 1506.886 kb on - strand, within EX28DRAFT_1492at 1506.961 kb on + strandat 1506.961 kb on + strandat 1506.961 kb on + strandat 1506.961 kb on + strandat 1506.962 kb on - strandat 1506.962 kb on - strandat 1506.973 kb on + strandat 1507.028 kb on + strandat 1507.043 kb on + strandat 1507.043 kb on + strandat 1507.043 kb on + strandat 1507.093 kb on - strandat 1507.162 kb on + strandat 1507.162 kb on + strandat 1507.163 kb on - strandat 1507.163 kb on - strandat 1507.163 kb on - strandat 1507.163 kb on - strandat 1507.236 kb on - strandat 1507.361 kb on + strand, within EX28DRAFT_1493at 1507.403 kb on + strand, within EX28DRAFT_1493at 1507.403 kb on + strand, within EX28DRAFT_1493at 1507.404 kb on - strand, within EX28DRAFT_1493at 1507.404 kb on - strand, within EX28DRAFT_1493at 1507.573 kb on + strand, within EX28DRAFT_1493at 1507.573 kb on + strand, within EX28DRAFT_1493at 1507.773 kb on - strand, within EX28DRAFT_1493at 1507.774 kb on + strand, within EX28DRAFT_1493at 1507.775 kb on - strand, within EX28DRAFT_1493at 1507.877 kb on + strand, within EX28DRAFT_1493

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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1,505,342 + EX28DRAFT_1491 0.22 +0.0
1,505,570 + EX28DRAFT_1491 0.39 +1.0
1,505,571 - EX28DRAFT_1491 0.39 +1.1
1,506,059 - EX28DRAFT_1491 0.77 +0.1
1,506,174 + EX28DRAFT_1491 0.85 -1.3
1,506,202 + EX28DRAFT_1491 0.88 -0.1
1,506,202 + EX28DRAFT_1491 0.88 +0.2
1,506,202 + EX28DRAFT_1491 0.88 -0.1
1,506,203 - EX28DRAFT_1491 0.88 -0.5
1,506,354 + +3.0
1,506,355 - +1.5
1,506,724 + EX28DRAFT_1492 0.61 -0.7
1,506,725 - EX28DRAFT_1492 0.61 -1.3
1,506,886 - EX28DRAFT_1492 0.84 -0.7
1,506,961 + +0.0
1,506,961 + +0.1
1,506,961 + +0.9
1,506,961 + +2.4
1,506,962 - -1.7
1,506,962 - +0.3
1,506,973 + -1.1
1,507,028 + -2.1
1,507,043 + -4.9
1,507,043 + -0.9
1,507,043 + -0.5
1,507,093 - +0.7
1,507,162 + -1.1
1,507,162 + +1.2
1,507,163 - -0.3
1,507,163 - +0.2
1,507,163 - +2.2
1,507,163 - -1.0
1,507,236 - -2.3
1,507,361 + EX28DRAFT_1493 0.19 +0.7
1,507,403 + EX28DRAFT_1493 0.23 -0.1
1,507,403 + EX28DRAFT_1493 0.23 -1.1
1,507,404 - EX28DRAFT_1493 0.23 -0.3
1,507,404 - EX28DRAFT_1493 0.23 +0.3
1,507,573 + EX28DRAFT_1493 0.37 -0.4
1,507,573 + EX28DRAFT_1493 0.37 -2.9
1,507,773 - EX28DRAFT_1493 0.53 -0.1
1,507,774 + EX28DRAFT_1493 0.53 -2.7
1,507,775 - EX28DRAFT_1493 0.53 +0.5
1,507,877 + EX28DRAFT_1493 0.62 +0.8

Or see this region's nucleotide sequence