Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1420

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1418 and EX28DRAFT_1419 are separated by 8 nucleotidesEX28DRAFT_1419 and EX28DRAFT_1420 are separated by 11 nucleotidesEX28DRAFT_1420 and EX28DRAFT_1421 are separated by 285 nucleotides EX28DRAFT_1418: EX28DRAFT_1418 - phenylacetate-CoA oxygenase, PaaI subunit, at 1,425,882 to 1,426,628 _1418 EX28DRAFT_1419: EX28DRAFT_1419 - phenylacetate-CoA oxygenase, PaaH subunit, at 1,426,637 to 1,426,924 _1419 EX28DRAFT_1420: EX28DRAFT_1420 - phenylacetate-CoA oxygenase, PaaG subunit, at 1,426,936 to 1,427,865 _1420 EX28DRAFT_1421: EX28DRAFT_1421 - phenylacetic acid degradation protein paaN, at 1,428,151 to 1,430,193 _1421 Position (kb) 1426 1427 1428Strain fitness (log2 ratio) -3 -2 -1 0 1at 1425.983 kb on - strand, within EX28DRAFT_1418at 1425.987 kb on + strand, within EX28DRAFT_1418at 1426.248 kb on - strand, within EX28DRAFT_1418at 1426.465 kb on + strand, within EX28DRAFT_1418at 1426.466 kb on - strand, within EX28DRAFT_1418at 1426.642 kb on + strandat 1426.642 kb on + strandat 1426.642 kb on + strandat 1426.643 kb on - strandat 1426.643 kb on - strandat 1426.643 kb on - strandat 1426.643 kb on - strandat 1426.771 kb on + strand, within EX28DRAFT_1419at 1426.771 kb on + strand, within EX28DRAFT_1419at 1426.772 kb on - strand, within EX28DRAFT_1419at 1426.886 kb on + strand, within EX28DRAFT_1419at 1427.572 kb on + strand, within EX28DRAFT_1420at 1427.586 kb on - strand, within EX28DRAFT_1420at 1428.007 kb on - strandat 1428.213 kb on + strandat 1428.214 kb on - strandat 1428.288 kb on + strandat 1428.289 kb on + strandat 1428.447 kb on + strand, within EX28DRAFT_1421at 1428.478 kb on + strand, within EX28DRAFT_1421at 1428.536 kb on + strand, within EX28DRAFT_1421at 1428.537 kb on - strand, within EX28DRAFT_1421

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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1,425,983 - EX28DRAFT_1418 0.14 +0.5
1,425,987 + EX28DRAFT_1418 0.14 -0.3
1,426,248 - EX28DRAFT_1418 0.49 -0.1
1,426,465 + EX28DRAFT_1418 0.78 -2.0
1,426,466 - EX28DRAFT_1418 0.78 +1.7
1,426,642 + -2.9
1,426,642 + -1.6
1,426,642 + +0.3
1,426,643 - -1.1
1,426,643 - -1.1
1,426,643 - -0.6
1,426,643 - -2.1
1,426,771 + EX28DRAFT_1419 0.47 +0.3
1,426,771 + EX28DRAFT_1419 0.47 +0.1
1,426,772 - EX28DRAFT_1419 0.47 +0.2
1,426,886 + EX28DRAFT_1419 0.86 -0.5
1,427,572 + EX28DRAFT_1420 0.68 -1.6
1,427,586 - EX28DRAFT_1420 0.70 -0.2
1,428,007 - -0.9
1,428,213 + +0.4
1,428,214 - -0.8
1,428,288 + -0.4
1,428,289 + -0.6
1,428,447 + EX28DRAFT_1421 0.14 +1.0
1,428,478 + EX28DRAFT_1421 0.16 +0.1
1,428,536 + EX28DRAFT_1421 0.19 +1.5
1,428,537 - EX28DRAFT_1421 0.19 +0.3

Or see this region's nucleotide sequence