Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1235

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1234 and EX28DRAFT_1235 are separated by 22 nucleotidesEX28DRAFT_1235 and EX28DRAFT_1236 are separated by 114 nucleotidesEX28DRAFT_1236 and EX28DRAFT_1237 overlap by 14 nucleotides EX28DRAFT_1234: EX28DRAFT_1234 - ABC-type amino acid transport/signal transduction systems, periplasmic component/domain, at 1,253,001 to 1,253,774 _1234 EX28DRAFT_1235: EX28DRAFT_1235 - Aspartate/tyrosine/aromatic aminotransferase, at 1,253,797 to 1,254,966 _1235 EX28DRAFT_1236: EX28DRAFT_1236 - Transcriptional regulator, at 1,255,081 to 1,255,923 _1236 EX28DRAFT_1237: EX28DRAFT_1237 - Carboxylesterase type B, at 1,255,910 to 1,257,415 _1237 Position (kb) 1253 1254 1255Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1252.877 kb on - strandat 1252.932 kb on - strandat 1253.003 kb on - strandat 1253.033 kb on - strandat 1253.033 kb on - strandat 1253.036 kb on + strandat 1253.037 kb on - strandat 1253.037 kb on - strandat 1253.070 kb on + strandat 1253.071 kb on - strandat 1253.075 kb on + strandat 1253.153 kb on + strand, within EX28DRAFT_1234at 1253.288 kb on + strand, within EX28DRAFT_1234at 1253.300 kb on + strand, within EX28DRAFT_1234at 1253.300 kb on + strand, within EX28DRAFT_1234at 1253.302 kb on + strand, within EX28DRAFT_1234at 1253.303 kb on - strand, within EX28DRAFT_1234at 1253.303 kb on - strand, within EX28DRAFT_1234at 1253.453 kb on + strand, within EX28DRAFT_1234at 1253.757 kb on + strandat 1253.757 kb on + strandat 1253.776 kb on + strandat 1253.777 kb on - strandat 1253.777 kb on - strandat 1253.794 kb on - strandat 1253.920 kb on - strand, within EX28DRAFT_1235at 1254.034 kb on - strand, within EX28DRAFT_1235at 1254.123 kb on + strand, within EX28DRAFT_1235at 1254.124 kb on - strand, within EX28DRAFT_1235at 1254.124 kb on - strand, within EX28DRAFT_1235at 1254.224 kb on + strand, within EX28DRAFT_1235at 1254.252 kb on - strand, within EX28DRAFT_1235at 1254.274 kb on - strand, within EX28DRAFT_1235at 1254.453 kb on + strand, within EX28DRAFT_1235at 1254.606 kb on - strand, within EX28DRAFT_1235at 1254.606 kb on - strand, within EX28DRAFT_1235at 1254.606 kb on - strand, within EX28DRAFT_1235at 1254.730 kb on - strand, within EX28DRAFT_1235at 1254.739 kb on - strand, within EX28DRAFT_1235at 1254.865 kb on - strandat 1255.070 kb on + strandat 1255.071 kb on - strandat 1255.078 kb on + strandat 1255.078 kb on + strandat 1255.078 kb on + strandat 1255.079 kb on - strandat 1255.079 kb on - strandat 1255.079 kb on - strandat 1255.079 kb on - strandat 1255.080 kb on + strandat 1255.081 kb on - strandat 1255.081 kb on - strandat 1255.081 kb on - strandat 1255.572 kb on - strand, within EX28DRAFT_1236at 1255.805 kb on + strand, within EX28DRAFT_1236at 1255.826 kb on + strand, within EX28DRAFT_1236at 1255.827 kb on - strand, within EX28DRAFT_1236

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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1,252,877 - -1.2
1,252,932 - +0.2
1,253,003 - +0.8
1,253,033 - +1.4
1,253,033 - -1.8
1,253,036 + +1.1
1,253,037 - -2.8
1,253,037 - +0.4
1,253,070 + +0.1
1,253,071 - +0.3
1,253,075 + +0.2
1,253,153 + EX28DRAFT_1234 0.20 -1.2
1,253,288 + EX28DRAFT_1234 0.37 -3.7
1,253,300 + EX28DRAFT_1234 0.39 -0.0
1,253,300 + EX28DRAFT_1234 0.39 -2.5
1,253,302 + EX28DRAFT_1234 0.39 +0.0
1,253,303 - EX28DRAFT_1234 0.39 +1.2
1,253,303 - EX28DRAFT_1234 0.39 +0.8
1,253,453 + EX28DRAFT_1234 0.58 +0.2
1,253,757 + +0.6
1,253,757 + +0.7
1,253,776 + +0.0
1,253,777 - -1.2
1,253,777 - -1.1
1,253,794 - -1.2
1,253,920 - EX28DRAFT_1235 0.11 +0.8
1,254,034 - EX28DRAFT_1235 0.20 -0.1
1,254,123 + EX28DRAFT_1235 0.28 +1.2
1,254,124 - EX28DRAFT_1235 0.28 -1.2
1,254,124 - EX28DRAFT_1235 0.28 +1.7
1,254,224 + EX28DRAFT_1235 0.36 +0.9
1,254,252 - EX28DRAFT_1235 0.39 -0.9
1,254,274 - EX28DRAFT_1235 0.41 +0.0
1,254,453 + EX28DRAFT_1235 0.56 -0.9
1,254,606 - EX28DRAFT_1235 0.69 +1.0
1,254,606 - EX28DRAFT_1235 0.69 -0.2
1,254,606 - EX28DRAFT_1235 0.69 -2.8
1,254,730 - EX28DRAFT_1235 0.80 -1.1
1,254,739 - EX28DRAFT_1235 0.81 -1.8
1,254,865 - +1.3
1,255,070 + +0.1
1,255,071 - +0.9
1,255,078 + -0.6
1,255,078 + -1.1
1,255,078 + -1.2
1,255,079 - +2.1
1,255,079 - -1.8
1,255,079 - +0.5
1,255,079 - +0.6
1,255,080 + -0.2
1,255,081 - -0.2
1,255,081 - +0.5
1,255,081 - -0.3
1,255,572 - EX28DRAFT_1236 0.58 +0.6
1,255,805 + EX28DRAFT_1236 0.86 -4.2
1,255,826 + EX28DRAFT_1236 0.88 +0.0
1,255,827 - EX28DRAFT_1236 0.88 -2.1

Or see this region's nucleotide sequence