Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1132

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1130 and EX28DRAFT_1131 are separated by 87 nucleotidesEX28DRAFT_1131 and EX28DRAFT_1132 are separated by 47 nucleotidesEX28DRAFT_1132 and EX28DRAFT_1133 are separated by 7 nucleotidesEX28DRAFT_1133 and EX28DRAFT_1134 are separated by 41 nucleotides EX28DRAFT_1130: EX28DRAFT_1130 - RNA polymerase sigma factor, sigma-70 family, at 1,144,792 to 1,145,352 _1130 EX28DRAFT_1131: EX28DRAFT_1131 - hypothetical protein, at 1,145,440 to 1,145,811 _1131 EX28DRAFT_1132: EX28DRAFT_1132 - Thiol:disulfide interchange protein, at 1,145,859 to 1,147,883 _1132 EX28DRAFT_1133: EX28DRAFT_1133 - Protein-disulfide isomerase, at 1,147,891 to 1,148,502 _1133 EX28DRAFT_1134: EX28DRAFT_1134 - Protein-disulfide isomerase, at 1,148,544 to 1,149,302 _1134 Position (kb) 1145 1146 1147 1148Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1144.925 kb on - strand, within EX28DRAFT_1130at 1145.055 kb on - strand, within EX28DRAFT_1130at 1145.129 kb on - strand, within EX28DRAFT_1130at 1145.232 kb on + strand, within EX28DRAFT_1130at 1145.348 kb on + strandat 1145.721 kb on + strand, within EX28DRAFT_1131at 1145.721 kb on + strand, within EX28DRAFT_1131at 1145.780 kb on + strandat 1145.780 kb on + strandat 1145.781 kb on - strandat 1146.025 kb on + strandat 1146.026 kb on - strandat 1146.045 kb on + strandat 1146.045 kb on + strandat 1146.144 kb on - strand, within EX28DRAFT_1132at 1146.333 kb on - strand, within EX28DRAFT_1132at 1146.359 kb on + strand, within EX28DRAFT_1132at 1146.456 kb on + strand, within EX28DRAFT_1132at 1146.457 kb on - strand, within EX28DRAFT_1132at 1146.457 kb on - strand, within EX28DRAFT_1132at 1146.457 kb on - strand, within EX28DRAFT_1132at 1146.932 kb on + strand, within EX28DRAFT_1132at 1147.274 kb on - strand, within EX28DRAFT_1132at 1147.330 kb on + strand, within EX28DRAFT_1132at 1147.331 kb on - strand, within EX28DRAFT_1132at 1147.608 kb on - strand, within EX28DRAFT_1132at 1147.887 kb on + strandat 1147.887 kb on + strandat 1147.887 kb on + strandat 1147.888 kb on - strandat 1147.888 kb on - strandat 1147.909 kb on - strandat 1148.077 kb on + strand, within EX28DRAFT_1133at 1148.077 kb on + strand, within EX28DRAFT_1133at 1148.094 kb on + strand, within EX28DRAFT_1133at 1148.110 kb on + strand, within EX28DRAFT_1133at 1148.158 kb on - strand, within EX28DRAFT_1133at 1148.241 kb on + strand, within EX28DRAFT_1133at 1148.558 kb on - strandat 1148.560 kb on + strandat 1148.561 kb on - strandat 1148.649 kb on - strand, within EX28DRAFT_1134at 1148.649 kb on - strand, within EX28DRAFT_1134at 1148.820 kb on + strand, within EX28DRAFT_1134

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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1,144,925 - EX28DRAFT_1130 0.24 -1.2
1,145,055 - EX28DRAFT_1130 0.47 +0.6
1,145,129 - EX28DRAFT_1130 0.60 -1.2
1,145,232 + EX28DRAFT_1130 0.78 -0.4
1,145,348 + -0.2
1,145,721 + EX28DRAFT_1131 0.76 +0.2
1,145,721 + EX28DRAFT_1131 0.76 -3.7
1,145,780 + -2.5
1,145,780 + -0.5
1,145,781 - +0.2
1,146,025 + +0.4
1,146,026 - +0.4
1,146,045 + -0.1
1,146,045 + +0.3
1,146,144 - EX28DRAFT_1132 0.14 +2.2
1,146,333 - EX28DRAFT_1132 0.23 -0.3
1,146,359 + EX28DRAFT_1132 0.25 -0.0
1,146,456 + EX28DRAFT_1132 0.29 -0.2
1,146,457 - EX28DRAFT_1132 0.30 +0.2
1,146,457 - EX28DRAFT_1132 0.30 +0.6
1,146,457 - EX28DRAFT_1132 0.30 +0.5
1,146,932 + EX28DRAFT_1132 0.53 +0.2
1,147,274 - EX28DRAFT_1132 0.70 +0.4
1,147,330 + EX28DRAFT_1132 0.73 +0.6
1,147,331 - EX28DRAFT_1132 0.73 +0.8
1,147,608 - EX28DRAFT_1132 0.86 +1.6
1,147,887 + +0.5
1,147,887 + +0.2
1,147,887 + -0.3
1,147,888 - +0.1
1,147,888 - -0.3
1,147,909 - +1.3
1,148,077 + EX28DRAFT_1133 0.30 +1.1
1,148,077 + EX28DRAFT_1133 0.30 -0.2
1,148,094 + EX28DRAFT_1133 0.33 -0.4
1,148,110 + EX28DRAFT_1133 0.36 -1.7
1,148,158 - EX28DRAFT_1133 0.44 +0.4
1,148,241 + EX28DRAFT_1133 0.57 +1.2
1,148,558 - +1.4
1,148,560 + -0.4
1,148,561 - +0.4
1,148,649 - EX28DRAFT_1134 0.14 -0.8
1,148,649 - EX28DRAFT_1134 0.14 +1.7
1,148,820 + EX28DRAFT_1134 0.36 +0.7

Or see this region's nucleotide sequence