Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1076

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1074 and EX28DRAFT_1075 are separated by 28 nucleotidesEX28DRAFT_1075 and EX28DRAFT_1076 overlap by 8 nucleotidesEX28DRAFT_1076 and EX28DRAFT_1077 overlap by 4 nucleotides EX28DRAFT_1074: EX28DRAFT_1074 - ABC-type branched-chain amino acid transport systems, periplasmic component, at 1,086,608 to 1,087,765 _1074 EX28DRAFT_1075: EX28DRAFT_1075 - ABC-type branched-chain amino acid transport systems, ATPase component, at 1,087,794 to 1,088,513 _1075 EX28DRAFT_1076: EX28DRAFT_1076 - ABC-type branched-chain amino acid transport systems, ATPase component, at 1,088,506 to 1,089,273 _1076 EX28DRAFT_1077: EX28DRAFT_1077 - ABC-type branched-chain amino acid transport system, permease component, at 1,089,270 to 1,090,376 _1077 Position (kb) 1088 1089 1090Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1087.583 kb on - strand, within EX28DRAFT_1074at 1087.586 kb on - strand, within EX28DRAFT_1074at 1087.717 kb on + strandat 1087.817 kb on - strandat 1088.414 kb on + strand, within EX28DRAFT_1075at 1088.474 kb on - strandat 1088.592 kb on + strand, within EX28DRAFT_1076at 1088.597 kb on + strand, within EX28DRAFT_1076at 1089.075 kb on - strand, within EX28DRAFT_1076at 1089.257 kb on - strandat 1089.275 kb on + strandat 1089.275 kb on + strandat 1089.276 kb on - strandat 1089.634 kb on + strand, within EX28DRAFT_1077at 1089.635 kb on - strand, within EX28DRAFT_1077at 1089.635 kb on - strand, within EX28DRAFT_1077at 1089.740 kb on + strand, within EX28DRAFT_1077at 1089.773 kb on - strand, within EX28DRAFT_1077at 1089.816 kb on + strand, within EX28DRAFT_1077at 1089.817 kb on - strand, within EX28DRAFT_1077at 1089.961 kb on + strand, within EX28DRAFT_1077at 1089.996 kb on + strand, within EX28DRAFT_1077at 1090.037 kb on + strand, within EX28DRAFT_1077at 1090.048 kb on + strand, within EX28DRAFT_1077at 1090.048 kb on + strand, within EX28DRAFT_1077at 1090.048 kb on + strand, within EX28DRAFT_1077at 1090.150 kb on + strand, within EX28DRAFT_1077at 1090.199 kb on + strand, within EX28DRAFT_1077at 1090.224 kb on - strand, within EX28DRAFT_1077at 1090.225 kb on + strand, within EX28DRAFT_1077at 1090.225 kb on + strand, within EX28DRAFT_1077at 1090.226 kb on - strand, within EX28DRAFT_1077at 1090.226 kb on - strand, within EX28DRAFT_1077at 1090.259 kb on - strand, within EX28DRAFT_1077

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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1,087,583 - EX28DRAFT_1074 0.84 +2.0
1,087,586 - EX28DRAFT_1074 0.84 +0.8
1,087,717 + +1.1
1,087,817 - -1.1
1,088,414 + EX28DRAFT_1075 0.86 -0.9
1,088,474 - +0.3
1,088,592 + EX28DRAFT_1076 0.11 -3.6
1,088,597 + EX28DRAFT_1076 0.12 -2.7
1,089,075 - EX28DRAFT_1076 0.74 +0.5
1,089,257 - -2.1
1,089,275 + -0.8
1,089,275 + +1.3
1,089,276 - +0.6
1,089,634 + EX28DRAFT_1077 0.33 -0.7
1,089,635 - EX28DRAFT_1077 0.33 -2.1
1,089,635 - EX28DRAFT_1077 0.33 -4.4
1,089,740 + EX28DRAFT_1077 0.42 -0.9
1,089,773 - EX28DRAFT_1077 0.45 -0.4
1,089,816 + EX28DRAFT_1077 0.49 -3.9
1,089,817 - EX28DRAFT_1077 0.49 +0.1
1,089,961 + EX28DRAFT_1077 0.62 +0.4
1,089,996 + EX28DRAFT_1077 0.66 -1.7
1,090,037 + EX28DRAFT_1077 0.69 -0.2
1,090,048 + EX28DRAFT_1077 0.70 +0.1
1,090,048 + EX28DRAFT_1077 0.70 +0.1
1,090,048 + EX28DRAFT_1077 0.70 +0.3
1,090,150 + EX28DRAFT_1077 0.79 -1.9
1,090,199 + EX28DRAFT_1077 0.84 +0.1
1,090,224 - EX28DRAFT_1077 0.86 +1.1
1,090,225 + EX28DRAFT_1077 0.86 +0.3
1,090,225 + EX28DRAFT_1077 0.86 -0.3
1,090,226 - EX28DRAFT_1077 0.86 +1.3
1,090,226 - EX28DRAFT_1077 0.86 +0.7
1,090,259 - EX28DRAFT_1077 0.89 -0.1

Or see this region's nucleotide sequence