Experiment: M9 with sucrose and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1074 and EX28DRAFT_1075 are separated by 28 nucleotides EX28DRAFT_1075 and EX28DRAFT_1076 overlap by 8 nucleotides EX28DRAFT_1076 and EX28DRAFT_1077 overlap by 4 nucleotides
EX28DRAFT_1074: EX28DRAFT_1074 - ABC-type branched-chain amino acid transport systems, periplasmic component, at 1,086,608 to 1,087,765
_1074
EX28DRAFT_1075: EX28DRAFT_1075 - ABC-type branched-chain amino acid transport systems, ATPase component, at 1,087,794 to 1,088,513
_1075
EX28DRAFT_1076: EX28DRAFT_1076 - ABC-type branched-chain amino acid transport systems, ATPase component, at 1,088,506 to 1,089,273
_1076
EX28DRAFT_1077: EX28DRAFT_1077 - ABC-type branched-chain amino acid transport system, permease component, at 1,089,270 to 1,090,376
_1077
Position (kb)
1088
1089
1090 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1087.583 kb on - strand, within EX28DRAFT_1074 at 1087.586 kb on - strand, within EX28DRAFT_1074 at 1087.717 kb on + strand at 1087.817 kb on - strand at 1088.414 kb on + strand, within EX28DRAFT_1075 at 1088.474 kb on - strand at 1088.592 kb on + strand, within EX28DRAFT_1076 at 1088.597 kb on + strand, within EX28DRAFT_1076 at 1089.075 kb on - strand, within EX28DRAFT_1076 at 1089.257 kb on - strand at 1089.275 kb on + strand at 1089.275 kb on + strand at 1089.276 kb on - strand at 1089.634 kb on + strand, within EX28DRAFT_1077 at 1089.635 kb on - strand, within EX28DRAFT_1077 at 1089.635 kb on - strand, within EX28DRAFT_1077 at 1089.740 kb on + strand, within EX28DRAFT_1077 at 1089.773 kb on - strand, within EX28DRAFT_1077 at 1089.816 kb on + strand, within EX28DRAFT_1077 at 1089.817 kb on - strand, within EX28DRAFT_1077 at 1089.961 kb on + strand, within EX28DRAFT_1077 at 1089.996 kb on + strand, within EX28DRAFT_1077 at 1090.037 kb on + strand, within EX28DRAFT_1077 at 1090.048 kb on + strand, within EX28DRAFT_1077 at 1090.048 kb on + strand, within EX28DRAFT_1077 at 1090.048 kb on + strand, within EX28DRAFT_1077 at 1090.150 kb on + strand, within EX28DRAFT_1077 at 1090.199 kb on + strand, within EX28DRAFT_1077 at 1090.224 kb on - strand, within EX28DRAFT_1077 at 1090.225 kb on + strand, within EX28DRAFT_1077 at 1090.225 kb on + strand, within EX28DRAFT_1077 at 1090.226 kb on - strand, within EX28DRAFT_1077 at 1090.226 kb on - strand, within EX28DRAFT_1077 at 1090.259 kb on - strand, within EX28DRAFT_1077
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM remove 1,087,583 - EX28DRAFT_1074 0.84 +2.0 1,087,586 - EX28DRAFT_1074 0.84 +0.8 1,087,717 + +1.1 1,087,817 - -1.1 1,088,414 + EX28DRAFT_1075 0.86 -0.9 1,088,474 - +0.3 1,088,592 + EX28DRAFT_1076 0.11 -3.6 1,088,597 + EX28DRAFT_1076 0.12 -2.7 1,089,075 - EX28DRAFT_1076 0.74 +0.5 1,089,257 - -2.1 1,089,275 + -0.8 1,089,275 + +1.3 1,089,276 - +0.6 1,089,634 + EX28DRAFT_1077 0.33 -0.7 1,089,635 - EX28DRAFT_1077 0.33 -2.1 1,089,635 - EX28DRAFT_1077 0.33 -4.4 1,089,740 + EX28DRAFT_1077 0.42 -0.9 1,089,773 - EX28DRAFT_1077 0.45 -0.4 1,089,816 + EX28DRAFT_1077 0.49 -3.9 1,089,817 - EX28DRAFT_1077 0.49 +0.1 1,089,961 + EX28DRAFT_1077 0.62 +0.4 1,089,996 + EX28DRAFT_1077 0.66 -1.7 1,090,037 + EX28DRAFT_1077 0.69 -0.2 1,090,048 + EX28DRAFT_1077 0.70 +0.1 1,090,048 + EX28DRAFT_1077 0.70 +0.1 1,090,048 + EX28DRAFT_1077 0.70 +0.3 1,090,150 + EX28DRAFT_1077 0.79 -1.9 1,090,199 + EX28DRAFT_1077 0.84 +0.1 1,090,224 - EX28DRAFT_1077 0.86 +1.1 1,090,225 + EX28DRAFT_1077 0.86 +0.3 1,090,225 + EX28DRAFT_1077 0.86 -0.3 1,090,226 - EX28DRAFT_1077 0.86 +1.3 1,090,226 - EX28DRAFT_1077 0.86 +0.7 1,090,259 - EX28DRAFT_1077 0.89 -0.1
Or see this region's nucleotide sequence