Experiment: M9 with sucrose and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0585 and EX28DRAFT_0586 are separated by 604 nucleotides EX28DRAFT_0586 and EX28DRAFT_0587 are separated by 94 nucleotides
EX28DRAFT_0585: EX28DRAFT_0585 - anion transporter, at 584,727 to 586,235
_0585
EX28DRAFT_0586: EX28DRAFT_0586 - flavocytochrome c, at 586,840 to 589,620
_0586
EX28DRAFT_0587: EX28DRAFT_0587 - Membrane-associated lipoprotein involved in thiamine biosynthesis, at 589,715 to 590,677
_0587
Position (kb) 586
587
588
589
590 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 585.857 kb on + strand, within EX28DRAFT_0585 at 585.858 kb on - strand, within EX28DRAFT_0585 at 585.858 kb on - strand, within EX28DRAFT_0585 at 585.885 kb on - strand, within EX28DRAFT_0585 at 585.915 kb on - strand, within EX28DRAFT_0585 at 586.230 kb on - strand at 586.249 kb on - strand at 586.462 kb on + strand at 586.979 kb on - strand at 587.118 kb on + strand, within EX28DRAFT_0586 at 587.119 kb on - strand, within EX28DRAFT_0586 at 587.133 kb on + strand, within EX28DRAFT_0586 at 587.134 kb on - strand, within EX28DRAFT_0586 at 587.152 kb on + strand, within EX28DRAFT_0586 at 587.363 kb on - strand, within EX28DRAFT_0586 at 587.464 kb on - strand, within EX28DRAFT_0586 at 587.464 kb on - strand, within EX28DRAFT_0586 at 587.505 kb on + strand, within EX28DRAFT_0586 at 587.505 kb on + strand, within EX28DRAFT_0586 at 587.506 kb on - strand, within EX28DRAFT_0586 at 587.508 kb on + strand, within EX28DRAFT_0586 at 588.482 kb on - strand, within EX28DRAFT_0586 at 588.634 kb on - strand, within EX28DRAFT_0586 at 588.670 kb on + strand, within EX28DRAFT_0586 at 588.878 kb on - strand, within EX28DRAFT_0586 at 589.021 kb on + strand, within EX28DRAFT_0586 at 589.088 kb on - strand, within EX28DRAFT_0586 at 589.148 kb on - strand, within EX28DRAFT_0586 at 589.153 kb on + strand, within EX28DRAFT_0586 at 589.153 kb on + strand, within EX28DRAFT_0586 at 589.153 kb on + strand, within EX28DRAFT_0586 at 589.153 kb on + strand, within EX28DRAFT_0586 at 589.153 kb on + strand, within EX28DRAFT_0586 at 589.153 kb on + strand, within EX28DRAFT_0586 at 589.154 kb on - strand, within EX28DRAFT_0586 at 589.154 kb on - strand, within EX28DRAFT_0586 at 589.154 kb on - strand, within EX28DRAFT_0586 at 589.154 kb on - strand, within EX28DRAFT_0586 at 589.175 kb on + strand, within EX28DRAFT_0586 at 589.176 kb on - strand, within EX28DRAFT_0586 at 589.176 kb on - strand, within EX28DRAFT_0586 at 589.176 kb on - strand, within EX28DRAFT_0586 at 589.205 kb on - strand, within EX28DRAFT_0586 at 589.561 kb on - strand at 589.696 kb on - strand at 589.736 kb on + strand at 589.995 kb on + strand, within EX28DRAFT_0587 at 590.177 kb on + strand, within EX28DRAFT_0587 at 590.178 kb on - strand, within EX28DRAFT_0587 at 590.201 kb on + strand, within EX28DRAFT_0587 at 590.202 kb on - strand, within EX28DRAFT_0587 at 590.413 kb on + strand, within EX28DRAFT_0587 at 590.413 kb on + strand, within EX28DRAFT_0587 at 590.413 kb on + strand, within EX28DRAFT_0587 at 590.516 kb on + strand, within EX28DRAFT_0587 at 590.516 kb on + strand, within EX28DRAFT_0587 at 590.516 kb on + strand, within EX28DRAFT_0587
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM remove 585,857 + EX28DRAFT_0585 0.75 -0.3 585,858 - EX28DRAFT_0585 0.75 +0.7 585,858 - EX28DRAFT_0585 0.75 +0.0 585,885 - EX28DRAFT_0585 0.77 -3.5 585,915 - EX28DRAFT_0585 0.79 +3.7 586,230 - +0.1 586,249 - +1.3 586,462 + +0.3 586,979 - -2.4 587,118 + EX28DRAFT_0586 0.10 +0.2 587,119 - EX28DRAFT_0586 0.10 +0.2 587,133 + EX28DRAFT_0586 0.11 +0.4 587,134 - EX28DRAFT_0586 0.11 -0.8 587,152 + EX28DRAFT_0586 0.11 +0.3 587,363 - EX28DRAFT_0586 0.19 +0.4 587,464 - EX28DRAFT_0586 0.22 +0.0 587,464 - EX28DRAFT_0586 0.22 +3.3 587,505 + EX28DRAFT_0586 0.24 -0.2 587,505 + EX28DRAFT_0586 0.24 +1.0 587,506 - EX28DRAFT_0586 0.24 +0.7 587,508 + EX28DRAFT_0586 0.24 +1.4 588,482 - EX28DRAFT_0586 0.59 +1.4 588,634 - EX28DRAFT_0586 0.65 +0.5 588,670 + EX28DRAFT_0586 0.66 -0.4 588,878 - EX28DRAFT_0586 0.73 +0.4 589,021 + EX28DRAFT_0586 0.78 -0.1 589,088 - EX28DRAFT_0586 0.81 +1.0 589,148 - EX28DRAFT_0586 0.83 -0.5 589,153 + EX28DRAFT_0586 0.83 -0.8 589,153 + EX28DRAFT_0586 0.83 -1.9 589,153 + EX28DRAFT_0586 0.83 +1.4 589,153 + EX28DRAFT_0586 0.83 -4.9 589,153 + EX28DRAFT_0586 0.83 -0.4 589,153 + EX28DRAFT_0586 0.83 +1.6 589,154 - EX28DRAFT_0586 0.83 -0.0 589,154 - EX28DRAFT_0586 0.83 +0.4 589,154 - EX28DRAFT_0586 0.83 +0.0 589,154 - EX28DRAFT_0586 0.83 +0.6 589,175 + EX28DRAFT_0586 0.84 +0.1 589,176 - EX28DRAFT_0586 0.84 +0.9 589,176 - EX28DRAFT_0586 0.84 -0.8 589,176 - EX28DRAFT_0586 0.84 -1.4 589,205 - EX28DRAFT_0586 0.85 -4.8 589,561 - -0.5 589,696 - -0.4 589,736 + +2.5 589,995 + EX28DRAFT_0587 0.29 +0.8 590,177 + EX28DRAFT_0587 0.48 -1.1 590,178 - EX28DRAFT_0587 0.48 -1.9 590,201 + EX28DRAFT_0587 0.50 +0.7 590,202 - EX28DRAFT_0587 0.51 -0.1 590,413 + EX28DRAFT_0587 0.72 +0.5 590,413 + EX28DRAFT_0587 0.72 -2.2 590,413 + EX28DRAFT_0587 0.72 -1.4 590,516 + EX28DRAFT_0587 0.83 +0.4 590,516 + EX28DRAFT_0587 0.83 +0.8 590,516 + EX28DRAFT_0587 0.83 +0.2
Or see this region's nucleotide sequence