Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0559

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0557 and EX28DRAFT_0558 overlap by 4 nucleotidesEX28DRAFT_0558 and EX28DRAFT_0559 overlap by 4 nucleotidesEX28DRAFT_0559 and EX28DRAFT_0560 overlap by 1 nucleotides EX28DRAFT_0557: EX28DRAFT_0557 - Antimicrobial peptide resistance and lipid A acylation protein PagP, at 551,404 to 551,979 _0557 EX28DRAFT_0558: EX28DRAFT_0558 - Uncharacterized protein conserved in bacteria, at 551,976 to 552,941 _0558 EX28DRAFT_0559: EX28DRAFT_0559 - Cation/multidrug efflux pump, at 552,938 to 556,000 _0559 EX28DRAFT_0560: EX28DRAFT_0560 - RND family efflux transporter, MFP subunit, at 556,000 to 556,986 _0560 Position (kb) 552 553 554 555 556 557Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 551.969 kb on + strandat 552.041 kb on + strandat 552.136 kb on + strand, within EX28DRAFT_0558at 552.137 kb on - strand, within EX28DRAFT_0558at 552.237 kb on - strand, within EX28DRAFT_0558at 552.247 kb on + strand, within EX28DRAFT_0558at 552.247 kb on + strand, within EX28DRAFT_0558at 552.248 kb on - strand, within EX28DRAFT_0558at 552.248 kb on - strand, within EX28DRAFT_0558at 552.341 kb on + strand, within EX28DRAFT_0558at 552.434 kb on - strand, within EX28DRAFT_0558at 552.497 kb on - strand, within EX28DRAFT_0558at 552.607 kb on + strand, within EX28DRAFT_0558at 552.646 kb on - strand, within EX28DRAFT_0558at 552.649 kb on + strand, within EX28DRAFT_0558at 552.679 kb on + strand, within EX28DRAFT_0558at 552.680 kb on - strand, within EX28DRAFT_0558at 552.680 kb on - strand, within EX28DRAFT_0558at 552.680 kb on - strand, within EX28DRAFT_0558at 552.680 kb on - strand, within EX28DRAFT_0558at 552.854 kb on - strandat 552.854 kb on - strandat 552.854 kb on - strandat 552.871 kb on + strandat 552.879 kb on - strandat 552.899 kb on + strandat 552.900 kb on - strandat 552.900 kb on - strandat 552.961 kb on + strandat 552.962 kb on - strandat 552.962 kb on - strandat 552.978 kb on + strandat 552.978 kb on + strandat 552.978 kb on + strandat 552.978 kb on + strandat 552.978 kb on + strandat 552.978 kb on + strandat 552.979 kb on - strandat 552.979 kb on - strandat 552.979 kb on - strandat 552.982 kb on + strandat 553.012 kb on + strandat 553.012 kb on + strandat 553.099 kb on + strandat 553.259 kb on - strand, within EX28DRAFT_0559at 553.259 kb on - strand, within EX28DRAFT_0559at 553.376 kb on - strand, within EX28DRAFT_0559at 553.416 kb on - strand, within EX28DRAFT_0559at 553.656 kb on + strand, within EX28DRAFT_0559at 553.656 kb on + strand, within EX28DRAFT_0559at 553.656 kb on + strand, within EX28DRAFT_0559at 553.657 kb on - strand, within EX28DRAFT_0559at 553.657 kb on - strand, within EX28DRAFT_0559at 553.657 kb on - strand, within EX28DRAFT_0559at 553.825 kb on + strand, within EX28DRAFT_0559at 553.860 kb on + strand, within EX28DRAFT_0559at 554.077 kb on - strand, within EX28DRAFT_0559at 554.129 kb on + strand, within EX28DRAFT_0559at 554.145 kb on + strand, within EX28DRAFT_0559at 554.145 kb on + strand, within EX28DRAFT_0559at 554.146 kb on - strand, within EX28DRAFT_0559at 554.146 kb on - strand, within EX28DRAFT_0559at 554.146 kb on - strand, within EX28DRAFT_0559at 554.172 kb on + strand, within EX28DRAFT_0559at 554.191 kb on + strand, within EX28DRAFT_0559at 554.191 kb on + strand, within EX28DRAFT_0559at 554.192 kb on - strand, within EX28DRAFT_0559at 554.192 kb on - strand, within EX28DRAFT_0559at 554.192 kb on - strand, within EX28DRAFT_0559at 554.425 kb on + strand, within EX28DRAFT_0559at 554.467 kb on - strand, within EX28DRAFT_0559at 554.504 kb on - strand, within EX28DRAFT_0559at 554.539 kb on + strand, within EX28DRAFT_0559at 554.540 kb on - strand, within EX28DRAFT_0559at 554.540 kb on - strand, within EX28DRAFT_0559at 554.540 kb on - strand, within EX28DRAFT_0559at 554.617 kb on + strand, within EX28DRAFT_0559at 554.617 kb on + strand, within EX28DRAFT_0559at 554.721 kb on + strand, within EX28DRAFT_0559at 554.721 kb on + strand, within EX28DRAFT_0559at 554.721 kb on + strand, within EX28DRAFT_0559at 554.722 kb on - strand, within EX28DRAFT_0559at 554.865 kb on + strand, within EX28DRAFT_0559at 554.865 kb on + strand, within EX28DRAFT_0559at 554.865 kb on + strand, within EX28DRAFT_0559at 554.866 kb on - strand, within EX28DRAFT_0559at 554.870 kb on - strand, within EX28DRAFT_0559at 554.870 kb on - strand, within EX28DRAFT_0559at 554.986 kb on + strand, within EX28DRAFT_0559at 554.986 kb on + strand, within EX28DRAFT_0559at 554.989 kb on + strand, within EX28DRAFT_0559at 554.992 kb on + strand, within EX28DRAFT_0559at 555.044 kb on + strand, within EX28DRAFT_0559at 555.044 kb on + strand, within EX28DRAFT_0559at 555.045 kb on - strand, within EX28DRAFT_0559at 555.045 kb on - strand, within EX28DRAFT_0559at 555.045 kb on - strand, within EX28DRAFT_0559at 555.177 kb on + strand, within EX28DRAFT_0559at 555.177 kb on + strand, within EX28DRAFT_0559at 555.178 kb on - strand, within EX28DRAFT_0559at 555.178 kb on - strand, within EX28DRAFT_0559at 555.181 kb on + strand, within EX28DRAFT_0559at 555.182 kb on - strand, within EX28DRAFT_0559at 555.367 kb on + strand, within EX28DRAFT_0559at 555.368 kb on - strand, within EX28DRAFT_0559at 555.368 kb on - strand, within EX28DRAFT_0559at 555.504 kb on - strand, within EX28DRAFT_0559at 555.774 kb on + strandat 555.774 kb on + strandat 555.880 kb on + strandat 555.973 kb on + strandat 555.974 kb on - strandat 555.979 kb on + strandat 556.001 kb on + strandat 556.001 kb on + strandat 556.001 kb on + strandat 556.001 kb on + strandat 556.001 kb on + strandat 556.002 kb on - strandat 556.101 kb on + strand, within EX28DRAFT_0560at 556.286 kb on - strand, within EX28DRAFT_0560at 556.303 kb on - strand, within EX28DRAFT_0560at 556.350 kb on + strand, within EX28DRAFT_0560at 556.350 kb on + strand, within EX28DRAFT_0560at 556.350 kb on + strand, within EX28DRAFT_0560at 556.350 kb on + strand, within EX28DRAFT_0560at 556.350 kb on + strand, within EX28DRAFT_0560at 556.350 kb on + strand, within EX28DRAFT_0560at 556.351 kb on - strand, within EX28DRAFT_0560at 556.351 kb on - strand, within EX28DRAFT_0560at 556.351 kb on - strand, within EX28DRAFT_0560at 556.355 kb on - strand, within EX28DRAFT_0560at 556.356 kb on - strand, within EX28DRAFT_0560at 556.406 kb on + strand, within EX28DRAFT_0560at 556.407 kb on - strand, within EX28DRAFT_0560at 556.570 kb on + strand, within EX28DRAFT_0560at 556.571 kb on - strand, within EX28DRAFT_0560at 556.639 kb on + strand, within EX28DRAFT_0560at 556.640 kb on - strand, within EX28DRAFT_0560at 556.991 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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551,969 + -0.3
552,041 + -1.0
552,136 + EX28DRAFT_0558 0.17 +0.2
552,137 - EX28DRAFT_0558 0.17 +0.4
552,237 - EX28DRAFT_0558 0.27 +0.1
552,247 + EX28DRAFT_0558 0.28 +0.5
552,247 + EX28DRAFT_0558 0.28 +0.1
552,248 - EX28DRAFT_0558 0.28 -2.6
552,248 - EX28DRAFT_0558 0.28 +1.5
552,341 + EX28DRAFT_0558 0.38 -0.3
552,434 - EX28DRAFT_0558 0.47 -0.6
552,497 - EX28DRAFT_0558 0.54 -4.3
552,607 + EX28DRAFT_0558 0.65 +0.3
552,646 - EX28DRAFT_0558 0.69 -0.1
552,649 + EX28DRAFT_0558 0.70 +0.5
552,679 + EX28DRAFT_0558 0.73 +1.8
552,680 - EX28DRAFT_0558 0.73 -0.2
552,680 - EX28DRAFT_0558 0.73 -2.3
552,680 - EX28DRAFT_0558 0.73 +0.1
552,680 - EX28DRAFT_0558 0.73 -0.5
552,854 - +0.0
552,854 - +0.4
552,854 - +0.6
552,871 + -0.5
552,879 - +0.9
552,899 + -1.0
552,900 - +1.1
552,900 - -2.2
552,961 + +1.1
552,962 - -0.9
552,962 - -0.2
552,978 + -4.1
552,978 + -2.3
552,978 + +0.4
552,978 + -2.6
552,978 + -1.6
552,978 + -1.1
552,979 - -0.0
552,979 - +0.7
552,979 - +0.6
552,982 + -0.4
553,012 + +0.3
553,012 + -1.2
553,099 + -2.6
553,259 - EX28DRAFT_0559 0.10 -2.4
553,259 - EX28DRAFT_0559 0.10 +0.2
553,376 - EX28DRAFT_0559 0.14 -0.1
553,416 - EX28DRAFT_0559 0.16 +1.1
553,656 + EX28DRAFT_0559 0.23 -0.2
553,656 + EX28DRAFT_0559 0.23 -2.1
553,656 + EX28DRAFT_0559 0.23 -0.8
553,657 - EX28DRAFT_0559 0.23 +0.1
553,657 - EX28DRAFT_0559 0.23 -1.0
553,657 - EX28DRAFT_0559 0.23 +1.3
553,825 + EX28DRAFT_0559 0.29 +0.2
553,860 + EX28DRAFT_0559 0.30 -0.4
554,077 - EX28DRAFT_0559 0.37 +0.1
554,129 + EX28DRAFT_0559 0.39 -0.1
554,145 + EX28DRAFT_0559 0.39 -0.8
554,145 + EX28DRAFT_0559 0.39 -0.0
554,146 - EX28DRAFT_0559 0.39 +0.9
554,146 - EX28DRAFT_0559 0.39 +0.4
554,146 - EX28DRAFT_0559 0.39 -1.3
554,172 + EX28DRAFT_0559 0.40 -3.4
554,191 + EX28DRAFT_0559 0.41 +0.1
554,191 + EX28DRAFT_0559 0.41 +0.2
554,192 - EX28DRAFT_0559 0.41 -0.7
554,192 - EX28DRAFT_0559 0.41 +0.4
554,192 - EX28DRAFT_0559 0.41 -1.8
554,425 + EX28DRAFT_0559 0.49 -1.8
554,467 - EX28DRAFT_0559 0.50 +0.5
554,504 - EX28DRAFT_0559 0.51 -2.6
554,539 + EX28DRAFT_0559 0.52 +0.3
554,540 - EX28DRAFT_0559 0.52 -2.6
554,540 - EX28DRAFT_0559 0.52 -0.3
554,540 - EX28DRAFT_0559 0.52 -2.1
554,617 + EX28DRAFT_0559 0.55 +0.0
554,617 + EX28DRAFT_0559 0.55 +3.9
554,721 + EX28DRAFT_0559 0.58 +0.7
554,721 + EX28DRAFT_0559 0.58 +0.4
554,721 + EX28DRAFT_0559 0.58 +0.4
554,722 - EX28DRAFT_0559 0.58 -0.2
554,865 + EX28DRAFT_0559 0.63 -0.8
554,865 + EX28DRAFT_0559 0.63 +0.5
554,865 + EX28DRAFT_0559 0.63 -1.8
554,866 - EX28DRAFT_0559 0.63 +0.2
554,870 - EX28DRAFT_0559 0.63 -0.0
554,870 - EX28DRAFT_0559 0.63 -0.2
554,986 + EX28DRAFT_0559 0.67 -0.2
554,986 + EX28DRAFT_0559 0.67 -2.8
554,989 + EX28DRAFT_0559 0.67 +0.6
554,992 + EX28DRAFT_0559 0.67 -1.2
555,044 + EX28DRAFT_0559 0.69 +0.2
555,044 + EX28DRAFT_0559 0.69 +0.8
555,045 - EX28DRAFT_0559 0.69 -0.1
555,045 - EX28DRAFT_0559 0.69 -0.7
555,045 - EX28DRAFT_0559 0.69 -1.1
555,177 + EX28DRAFT_0559 0.73 -1.2
555,177 + EX28DRAFT_0559 0.73 -0.7
555,178 - EX28DRAFT_0559 0.73 -0.8
555,178 - EX28DRAFT_0559 0.73 -3.6
555,181 + EX28DRAFT_0559 0.73 +0.2
555,182 - EX28DRAFT_0559 0.73 -4.1
555,367 + EX28DRAFT_0559 0.79 +0.6
555,368 - EX28DRAFT_0559 0.79 -1.8
555,368 - EX28DRAFT_0559 0.79 +1.8
555,504 - EX28DRAFT_0559 0.84 -0.8
555,774 + +0.6
555,774 + -0.4
555,880 + -1.0
555,973 + +0.0
555,974 - +1.1
555,979 + +0.9
556,001 + -1.0
556,001 + +1.2
556,001 + +0.6
556,001 + +0.0
556,001 + -0.4
556,002 - -1.3
556,101 + EX28DRAFT_0560 0.10 -0.1
556,286 - EX28DRAFT_0560 0.29 +0.9
556,303 - EX28DRAFT_0560 0.31 -1.2
556,350 + EX28DRAFT_0560 0.35 -0.0
556,350 + EX28DRAFT_0560 0.35 +0.3
556,350 + EX28DRAFT_0560 0.35 -0.7
556,350 + EX28DRAFT_0560 0.35 +1.0
556,350 + EX28DRAFT_0560 0.35 -1.4
556,350 + EX28DRAFT_0560 0.35 +0.4
556,351 - EX28DRAFT_0560 0.36 -0.3
556,351 - EX28DRAFT_0560 0.36 -0.9
556,351 - EX28DRAFT_0560 0.36 -0.8
556,355 - EX28DRAFT_0560 0.36 -0.8
556,356 - EX28DRAFT_0560 0.36 -0.4
556,406 + EX28DRAFT_0560 0.41 -0.9
556,407 - EX28DRAFT_0560 0.41 +0.2
556,570 + EX28DRAFT_0560 0.58 +0.3
556,571 - EX28DRAFT_0560 0.58 +0.9
556,639 + EX28DRAFT_0560 0.65 +0.3
556,640 - EX28DRAFT_0560 0.65 +0.2
556,991 - +0.1

Or see this region's nucleotide sequence