Experiment: M9 with sucrose and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0314 and EX28DRAFT_0315 are separated by 92 nucleotides EX28DRAFT_0315 and EX28DRAFT_0316 are separated by 11 nucleotides EX28DRAFT_0316 and EX28DRAFT_0317 are separated by 75 nucleotides
EX28DRAFT_0314: EX28DRAFT_0314 - Uncharacterized protein conserved in bacteria, at 274,499 to 274,954
_0314
EX28DRAFT_0315: EX28DRAFT_0315 - Uncharacterized conserved protein, at 275,047 to 275,541
_0315
EX28DRAFT_0316: EX28DRAFT_0316 - haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E, at 275,553 to 276,212
_0316
EX28DRAFT_0317: EX28DRAFT_0317 - Di- and tricarboxylate transporters, at 276,288 to 278,120
_0317
Position (kb)
275
276
277 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 274.670 kb on - strand, within EX28DRAFT_0314 at 274.801 kb on + strand, within EX28DRAFT_0314 at 274.802 kb on - strand, within EX28DRAFT_0314 at 274.802 kb on - strand, within EX28DRAFT_0314 at 274.806 kb on + strand, within EX28DRAFT_0314 at 274.905 kb on + strand, within EX28DRAFT_0314 at 275.089 kb on + strand at 275.089 kb on + strand at 275.090 kb on - strand at 275.104 kb on - strand, within EX28DRAFT_0315 at 275.153 kb on + strand, within EX28DRAFT_0315 at 275.251 kb on + strand, within EX28DRAFT_0315 at 275.251 kb on + strand, within EX28DRAFT_0315 at 275.251 kb on + strand, within EX28DRAFT_0315 at 275.251 kb on + strand, within EX28DRAFT_0315 at 275.251 kb on + strand, within EX28DRAFT_0315 at 275.252 kb on - strand, within EX28DRAFT_0315 at 275.252 kb on - strand, within EX28DRAFT_0315 at 275.324 kb on + strand, within EX28DRAFT_0315 at 275.324 kb on + strand, within EX28DRAFT_0315 at 275.325 kb on - strand, within EX28DRAFT_0315 at 275.362 kb on + strand, within EX28DRAFT_0315 at 275.362 kb on + strand, within EX28DRAFT_0315 at 275.362 kb on + strand, within EX28DRAFT_0315 at 275.382 kb on + strand, within EX28DRAFT_0315 at 275.397 kb on + strand, within EX28DRAFT_0315 at 275.455 kb on + strand, within EX28DRAFT_0315 at 275.455 kb on + strand, within EX28DRAFT_0315 at 275.463 kb on + strand, within EX28DRAFT_0315 at 275.463 kb on + strand, within EX28DRAFT_0315 at 275.463 kb on + strand, within EX28DRAFT_0315 at 275.464 kb on - strand, within EX28DRAFT_0315 at 275.469 kb on - strand, within EX28DRAFT_0315 at 275.504 kb on + strand at 275.504 kb on + strand at 275.532 kb on + strand at 275.561 kb on + strand at 275.562 kb on - strand at 275.868 kb on - strand, within EX28DRAFT_0316 at 276.055 kb on + strand, within EX28DRAFT_0316 at 276.190 kb on + strand at 276.191 kb on - strand at 276.210 kb on + strand at 276.210 kb on + strand at 276.211 kb on - strand at 276.453 kb on - strand at 276.479 kb on + strand, within EX28DRAFT_0317 at 276.479 kb on + strand, within EX28DRAFT_0317 at 276.480 kb on - strand, within EX28DRAFT_0317 at 276.612 kb on - strand, within EX28DRAFT_0317 at 276.643 kb on + strand, within EX28DRAFT_0317 at 276.644 kb on - strand, within EX28DRAFT_0317 at 276.745 kb on + strand, within EX28DRAFT_0317 at 276.862 kb on - strand, within EX28DRAFT_0317 at 276.862 kb on - strand, within EX28DRAFT_0317 at 277.158 kb on - strand, within EX28DRAFT_0317
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM remove 274,670 - EX28DRAFT_0314 0.38 -0.8 274,801 + EX28DRAFT_0314 0.66 -0.9 274,802 - EX28DRAFT_0314 0.66 -0.0 274,802 - EX28DRAFT_0314 0.66 +1.4 274,806 + EX28DRAFT_0314 0.67 -0.9 274,905 + EX28DRAFT_0314 0.89 -0.5 275,089 + -0.3 275,089 + +0.6 275,090 - -1.3 275,104 - EX28DRAFT_0315 0.12 +0.5 275,153 + EX28DRAFT_0315 0.21 -0.4 275,251 + EX28DRAFT_0315 0.41 +0.4 275,251 + EX28DRAFT_0315 0.41 -3.0 275,251 + EX28DRAFT_0315 0.41 -1.7 275,251 + EX28DRAFT_0315 0.41 +0.7 275,251 + EX28DRAFT_0315 0.41 +0.2 275,252 - EX28DRAFT_0315 0.41 -0.0 275,252 - EX28DRAFT_0315 0.41 +0.1 275,324 + EX28DRAFT_0315 0.56 +0.4 275,324 + EX28DRAFT_0315 0.56 +0.6 275,325 - EX28DRAFT_0315 0.56 -0.2 275,362 + EX28DRAFT_0315 0.64 -1.2 275,362 + EX28DRAFT_0315 0.64 -0.2 275,362 + EX28DRAFT_0315 0.64 +0.2 275,382 + EX28DRAFT_0315 0.68 +0.4 275,397 + EX28DRAFT_0315 0.71 -1.8 275,455 + EX28DRAFT_0315 0.82 -0.4 275,455 + EX28DRAFT_0315 0.82 +2.0 275,463 + EX28DRAFT_0315 0.84 +0.6 275,463 + EX28DRAFT_0315 0.84 +0.6 275,463 + EX28DRAFT_0315 0.84 +0.7 275,464 - EX28DRAFT_0315 0.84 +0.4 275,469 - EX28DRAFT_0315 0.85 +0.3 275,504 + +0.4 275,504 + +0.2 275,532 + +0.4 275,561 + +0.4 275,562 - +0.8 275,868 - EX28DRAFT_0316 0.48 -1.5 276,055 + EX28DRAFT_0316 0.76 -0.3 276,190 + +0.6 276,191 - +1.0 276,210 + -0.4 276,210 + +0.3 276,211 - +0.5 276,453 - -3.3 276,479 + EX28DRAFT_0317 0.10 +0.3 276,479 + EX28DRAFT_0317 0.10 +0.4 276,480 - EX28DRAFT_0317 0.10 -0.7 276,612 - EX28DRAFT_0317 0.18 -1.7 276,643 + EX28DRAFT_0317 0.19 -0.0 276,644 - EX28DRAFT_0317 0.19 +0.2 276,745 + EX28DRAFT_0317 0.25 -0.8 276,862 - EX28DRAFT_0317 0.31 +0.0 276,862 - EX28DRAFT_0317 0.31 +1.0 277,158 - EX28DRAFT_0317 0.47 +0.1
Or see this region's nucleotide sequence