Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0316

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0314 and EX28DRAFT_0315 are separated by 92 nucleotidesEX28DRAFT_0315 and EX28DRAFT_0316 are separated by 11 nucleotidesEX28DRAFT_0316 and EX28DRAFT_0317 are separated by 75 nucleotides EX28DRAFT_0314: EX28DRAFT_0314 - Uncharacterized protein conserved in bacteria, at 274,499 to 274,954 _0314 EX28DRAFT_0315: EX28DRAFT_0315 - Uncharacterized conserved protein, at 275,047 to 275,541 _0315 EX28DRAFT_0316: EX28DRAFT_0316 - haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E, at 275,553 to 276,212 _0316 EX28DRAFT_0317: EX28DRAFT_0317 - Di- and tricarboxylate transporters, at 276,288 to 278,120 _0317 Position (kb) 275 276 277Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 274.670 kb on - strand, within EX28DRAFT_0314at 274.801 kb on + strand, within EX28DRAFT_0314at 274.802 kb on - strand, within EX28DRAFT_0314at 274.802 kb on - strand, within EX28DRAFT_0314at 274.806 kb on + strand, within EX28DRAFT_0314at 274.905 kb on + strand, within EX28DRAFT_0314at 275.089 kb on + strandat 275.089 kb on + strandat 275.090 kb on - strandat 275.104 kb on - strand, within EX28DRAFT_0315at 275.153 kb on + strand, within EX28DRAFT_0315at 275.251 kb on + strand, within EX28DRAFT_0315at 275.251 kb on + strand, within EX28DRAFT_0315at 275.251 kb on + strand, within EX28DRAFT_0315at 275.251 kb on + strand, within EX28DRAFT_0315at 275.251 kb on + strand, within EX28DRAFT_0315at 275.252 kb on - strand, within EX28DRAFT_0315at 275.252 kb on - strand, within EX28DRAFT_0315at 275.324 kb on + strand, within EX28DRAFT_0315at 275.324 kb on + strand, within EX28DRAFT_0315at 275.325 kb on - strand, within EX28DRAFT_0315at 275.362 kb on + strand, within EX28DRAFT_0315at 275.362 kb on + strand, within EX28DRAFT_0315at 275.362 kb on + strand, within EX28DRAFT_0315at 275.382 kb on + strand, within EX28DRAFT_0315at 275.397 kb on + strand, within EX28DRAFT_0315at 275.455 kb on + strand, within EX28DRAFT_0315at 275.455 kb on + strand, within EX28DRAFT_0315at 275.463 kb on + strand, within EX28DRAFT_0315at 275.463 kb on + strand, within EX28DRAFT_0315at 275.463 kb on + strand, within EX28DRAFT_0315at 275.464 kb on - strand, within EX28DRAFT_0315at 275.469 kb on - strand, within EX28DRAFT_0315at 275.504 kb on + strandat 275.504 kb on + strandat 275.532 kb on + strandat 275.561 kb on + strandat 275.562 kb on - strandat 275.868 kb on - strand, within EX28DRAFT_0316at 276.055 kb on + strand, within EX28DRAFT_0316at 276.190 kb on + strandat 276.191 kb on - strandat 276.210 kb on + strandat 276.210 kb on + strandat 276.211 kb on - strandat 276.453 kb on - strandat 276.479 kb on + strand, within EX28DRAFT_0317at 276.479 kb on + strand, within EX28DRAFT_0317at 276.480 kb on - strand, within EX28DRAFT_0317at 276.612 kb on - strand, within EX28DRAFT_0317at 276.643 kb on + strand, within EX28DRAFT_0317at 276.644 kb on - strand, within EX28DRAFT_0317at 276.745 kb on + strand, within EX28DRAFT_0317at 276.862 kb on - strand, within EX28DRAFT_0317at 276.862 kb on - strand, within EX28DRAFT_0317at 277.158 kb on - strand, within EX28DRAFT_0317

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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274,670 - EX28DRAFT_0314 0.38 -0.8
274,801 + EX28DRAFT_0314 0.66 -0.9
274,802 - EX28DRAFT_0314 0.66 -0.0
274,802 - EX28DRAFT_0314 0.66 +1.4
274,806 + EX28DRAFT_0314 0.67 -0.9
274,905 + EX28DRAFT_0314 0.89 -0.5
275,089 + -0.3
275,089 + +0.6
275,090 - -1.3
275,104 - EX28DRAFT_0315 0.12 +0.5
275,153 + EX28DRAFT_0315 0.21 -0.4
275,251 + EX28DRAFT_0315 0.41 +0.4
275,251 + EX28DRAFT_0315 0.41 -3.0
275,251 + EX28DRAFT_0315 0.41 -1.7
275,251 + EX28DRAFT_0315 0.41 +0.7
275,251 + EX28DRAFT_0315 0.41 +0.2
275,252 - EX28DRAFT_0315 0.41 -0.0
275,252 - EX28DRAFT_0315 0.41 +0.1
275,324 + EX28DRAFT_0315 0.56 +0.4
275,324 + EX28DRAFT_0315 0.56 +0.6
275,325 - EX28DRAFT_0315 0.56 -0.2
275,362 + EX28DRAFT_0315 0.64 -1.2
275,362 + EX28DRAFT_0315 0.64 -0.2
275,362 + EX28DRAFT_0315 0.64 +0.2
275,382 + EX28DRAFT_0315 0.68 +0.4
275,397 + EX28DRAFT_0315 0.71 -1.8
275,455 + EX28DRAFT_0315 0.82 -0.4
275,455 + EX28DRAFT_0315 0.82 +2.0
275,463 + EX28DRAFT_0315 0.84 +0.6
275,463 + EX28DRAFT_0315 0.84 +0.6
275,463 + EX28DRAFT_0315 0.84 +0.7
275,464 - EX28DRAFT_0315 0.84 +0.4
275,469 - EX28DRAFT_0315 0.85 +0.3
275,504 + +0.4
275,504 + +0.2
275,532 + +0.4
275,561 + +0.4
275,562 - +0.8
275,868 - EX28DRAFT_0316 0.48 -1.5
276,055 + EX28DRAFT_0316 0.76 -0.3
276,190 + +0.6
276,191 - +1.0
276,210 + -0.4
276,210 + +0.3
276,211 - +0.5
276,453 - -3.3
276,479 + EX28DRAFT_0317 0.10 +0.3
276,479 + EX28DRAFT_0317 0.10 +0.4
276,480 - EX28DRAFT_0317 0.10 -0.7
276,612 - EX28DRAFT_0317 0.18 -1.7
276,643 + EX28DRAFT_0317 0.19 -0.0
276,644 - EX28DRAFT_0317 0.19 +0.2
276,745 + EX28DRAFT_0317 0.25 -0.8
276,862 - EX28DRAFT_0317 0.31 +0.0
276,862 - EX28DRAFT_0317 0.31 +1.0
277,158 - EX28DRAFT_0317 0.47 +0.1

Or see this region's nucleotide sequence