Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0145

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0144 and EX28DRAFT_0145 are separated by 656 nucleotidesEX28DRAFT_0145 and EX28DRAFT_0146 are separated by 82 nucleotides EX28DRAFT_0144: EX28DRAFT_0144 - Fels-1 Prophage Protein-like, at 88,557 to 88,919 _0144 EX28DRAFT_0145: EX28DRAFT_0145 - Protein of unknown function (DUF1641), at 89,576 to 89,893 _0145 EX28DRAFT_0146: EX28DRAFT_0146 - transcriptional regulator, RpiR family, at 89,976 to 90,809 _0146 Position (kb) 89 90Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 88.677 kb on + strand, within EX28DRAFT_0144at 88.681 kb on + strand, within EX28DRAFT_0144at 88.681 kb on + strand, within EX28DRAFT_0144at 88.681 kb on + strand, within EX28DRAFT_0144at 88.681 kb on + strand, within EX28DRAFT_0144at 88.682 kb on - strand, within EX28DRAFT_0144at 88.682 kb on - strand, within EX28DRAFT_0144at 88.725 kb on + strand, within EX28DRAFT_0144at 88.725 kb on + strand, within EX28DRAFT_0144at 88.725 kb on + strand, within EX28DRAFT_0144at 88.726 kb on - strand, within EX28DRAFT_0144at 88.848 kb on + strand, within EX28DRAFT_0144at 88.849 kb on - strand, within EX28DRAFT_0144at 88.852 kb on - strand, within EX28DRAFT_0144at 88.886 kb on + strandat 88.951 kb on - strandat 88.951 kb on - strandat 88.965 kb on + strandat 88.965 kb on + strandat 88.966 kb on - strandat 88.966 kb on - strandat 88.991 kb on + strandat 89.017 kb on - strandat 89.035 kb on + strandat 89.036 kb on - strandat 89.047 kb on + strandat 89.047 kb on + strandat 89.069 kb on - strandat 89.079 kb on - strandat 89.271 kb on + strandat 89.271 kb on + strandat 89.288 kb on + strandat 89.289 kb on - strandat 89.293 kb on - strandat 89.293 kb on - strandat 89.347 kb on + strandat 89.369 kb on + strandat 89.398 kb on + strandat 89.399 kb on - strandat 89.435 kb on + strandat 89.436 kb on - strandat 89.523 kb on - strandat 89.528 kb on + strandat 89.546 kb on + strandat 89.546 kb on + strandat 89.547 kb on - strandat 89.548 kb on + strandat 89.549 kb on - strandat 89.741 kb on - strand, within EX28DRAFT_0145at 89.840 kb on - strand, within EX28DRAFT_0145at 89.925 kb on + strandat 89.925 kb on + strandat 89.943 kb on + strandat 89.943 kb on + strandat 89.944 kb on - strandat 89.944 kb on - strandat 89.961 kb on - strandat 89.981 kb on + strandat 89.981 kb on + strandat 90.320 kb on - strand, within EX28DRAFT_0146at 90.329 kb on - strand, within EX28DRAFT_0146at 90.341 kb on + strand, within EX28DRAFT_0146at 90.367 kb on + strand, within EX28DRAFT_0146at 90.367 kb on + strand, within EX28DRAFT_0146at 90.367 kb on + strand, within EX28DRAFT_0146at 90.368 kb on - strand, within EX28DRAFT_0146at 90.547 kb on + strand, within EX28DRAFT_0146at 90.832 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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88,677 + EX28DRAFT_0144 0.33 -0.4
88,681 + EX28DRAFT_0144 0.34 +1.4
88,681 + EX28DRAFT_0144 0.34 +0.4
88,681 + EX28DRAFT_0144 0.34 +0.2
88,681 + EX28DRAFT_0144 0.34 +1.6
88,682 - EX28DRAFT_0144 0.34 +0.0
88,682 - EX28DRAFT_0144 0.34 +0.1
88,725 + EX28DRAFT_0144 0.46 -0.1
88,725 + EX28DRAFT_0144 0.46 +0.1
88,725 + EX28DRAFT_0144 0.46 -0.1
88,726 - EX28DRAFT_0144 0.47 -0.7
88,848 + EX28DRAFT_0144 0.80 +0.0
88,849 - EX28DRAFT_0144 0.80 +0.0
88,852 - EX28DRAFT_0144 0.81 +0.2
88,886 + +0.4
88,951 - +0.5
88,951 - +0.4
88,965 + -4.1
88,965 + -0.1
88,966 - +0.5
88,966 - -0.4
88,991 + -1.4
89,017 - -2.2
89,035 + -2.7
89,036 - -1.3
89,047 + +0.7
89,047 + +0.2
89,069 - -0.4
89,079 - +0.1
89,271 + -0.1
89,271 + -1.3
89,288 + +0.7
89,289 - +0.8
89,293 - +0.9
89,293 - -0.4
89,347 + +0.0
89,369 + -0.1
89,398 + -2.9
89,399 - +0.4
89,435 + +0.4
89,436 - +0.3
89,523 - -0.3
89,528 + -0.4
89,546 + -3.0
89,546 + +0.5
89,547 - +0.0
89,548 + -0.0
89,549 - +0.2
89,741 - EX28DRAFT_0145 0.52 -0.9
89,840 - EX28DRAFT_0145 0.83 -3.9
89,925 + -0.6
89,925 + -0.3
89,943 + +0.9
89,943 + -0.6
89,944 - +1.1
89,944 - -0.2
89,961 - -1.5
89,981 + -1.6
89,981 + -0.2
90,320 - EX28DRAFT_0146 0.41 +1.1
90,329 - EX28DRAFT_0146 0.42 +0.2
90,341 + EX28DRAFT_0146 0.44 -1.8
90,367 + EX28DRAFT_0146 0.47 -1.4
90,367 + EX28DRAFT_0146 0.47 -0.8
90,367 + EX28DRAFT_0146 0.47 +0.4
90,368 - EX28DRAFT_0146 0.47 -0.1
90,547 + EX28DRAFT_0146 0.68 -2.4
90,832 - +0.3

Or see this region's nucleotide sequence