Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0068

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0067 and EX28DRAFT_0068 are separated by 313 nucleotidesEX28DRAFT_0068 and EX28DRAFT_0069 are separated by 50 nucleotides EX28DRAFT_0067: EX28DRAFT_0067 - Uracil-DNA glycosylase (EC 3.2.2.-), at 8,910 to 9,599 _0067 EX28DRAFT_0068: EX28DRAFT_0068 - autonomous glycyl radical cofactor GrcA, at 9,913 to 10,296 _0068 EX28DRAFT_0069: EX28DRAFT_0069 - Superfamily II DNA and RNA helicases, at 10,347 to 11,675 _0069 Position (kb) 9 10 11Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 8.928 kb on + strandat 8.931 kb on + strandat 8.931 kb on + strandat 9.120 kb on + strand, within EX28DRAFT_0067at 9.146 kb on + strand, within EX28DRAFT_0067at 9.230 kb on + strand, within EX28DRAFT_0067at 9.321 kb on - strand, within EX28DRAFT_0067at 9.322 kb on + strand, within EX28DRAFT_0067at 9.322 kb on + strand, within EX28DRAFT_0067at 9.322 kb on + strand, within EX28DRAFT_0067at 9.322 kb on + strand, within EX28DRAFT_0067at 9.323 kb on - strand, within EX28DRAFT_0067at 9.323 kb on - strand, within EX28DRAFT_0067at 9.323 kb on - strand, within EX28DRAFT_0067at 9.323 kb on - strand, within EX28DRAFT_0067at 9.323 kb on - strand, within EX28DRAFT_0067at 9.539 kb on + strandat 9.540 kb on - strandat 9.544 kb on + strandat 9.545 kb on - strandat 9.631 kb on - strandat 9.635 kb on + strandat 9.830 kb on + strandat 9.830 kb on + strandat 9.831 kb on - strandat 9.832 kb on + strandat 9.832 kb on + strandat 9.832 kb on + strandat 9.832 kb on + strandat 9.832 kb on + strandat 9.832 kb on + strandat 9.832 kb on + strandat 9.832 kb on + strandat 9.833 kb on - strandat 9.833 kb on - strandat 9.833 kb on - strandat 9.834 kb on + strandat 9.834 kb on + strandat 9.834 kb on + strandat 9.835 kb on - strandat 9.836 kb on + strandat 9.889 kb on + strandat 9.889 kb on + strandat 9.890 kb on - strandat 9.890 kb on - strandat 9.895 kb on - strandat 9.918 kb on + strandat 9.919 kb on - strandat 10.072 kb on + strand, within EX28DRAFT_0068at 10.137 kb on - strand, within EX28DRAFT_0068at 10.275 kb on + strandat 10.403 kb on + strandat 10.682 kb on - strand, within EX28DRAFT_0069

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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8,928 + -0.3
8,931 + +0.5
8,931 + -0.2
9,120 + EX28DRAFT_0067 0.30 +0.8
9,146 + EX28DRAFT_0067 0.34 +0.2
9,230 + EX28DRAFT_0067 0.46 +1.7
9,321 - EX28DRAFT_0067 0.60 -1.5
9,322 + EX28DRAFT_0067 0.60 -1.6
9,322 + EX28DRAFT_0067 0.60 +0.4
9,322 + EX28DRAFT_0067 0.60 -1.3
9,322 + EX28DRAFT_0067 0.60 +0.3
9,323 - EX28DRAFT_0067 0.60 +0.6
9,323 - EX28DRAFT_0067 0.60 -1.2
9,323 - EX28DRAFT_0067 0.60 -1.2
9,323 - EX28DRAFT_0067 0.60 -0.1
9,323 - EX28DRAFT_0067 0.60 -1.9
9,539 + +0.8
9,540 - +0.7
9,544 + +0.4
9,545 - -2.7
9,631 - +0.4
9,635 + +0.7
9,830 + +0.4
9,830 + +0.8
9,831 - -0.3
9,832 + -0.2
9,832 + -1.2
9,832 + +0.3
9,832 + +0.4
9,832 + -0.2
9,832 + +3.7
9,832 + +0.8
9,832 + -4.2
9,833 - -1.2
9,833 - +0.2
9,833 - -2.6
9,834 + -0.1
9,834 + -3.8
9,834 + +0.1
9,835 - +1.4
9,836 + -2.7
9,889 + -0.3
9,889 + -1.8
9,890 - -2.9
9,890 - +0.2
9,895 - +0.8
9,918 + +2.4
9,919 - -1.4
10,072 + EX28DRAFT_0068 0.41 +1.2
10,137 - EX28DRAFT_0068 0.58 -3.2
10,275 + +0.7
10,403 + -0.3
10,682 - EX28DRAFT_0069 0.25 -0.5

Or see this region's nucleotide sequence