Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0047

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_0045 and EX28DRAFT_0046 are separated by 4 nucleotidesEX28DRAFT_0046 and EX28DRAFT_0047 overlap by 4 nucleotidesEX28DRAFT_0047 and EX28DRAFT_0048 overlap by 25 nucleotides EX28DRAFT_0045: EX28DRAFT_0045 - Putative translation factor (SUA5), at 24,144 to 24,716 _0045 EX28DRAFT_0046: EX28DRAFT_0046 - shikimate dehydrogenase, at 24,721 to 25,539 _0046 EX28DRAFT_0047: EX28DRAFT_0047 - Protein of unknown function (DUF1488), at 25,536 to 25,784 _0047 EX28DRAFT_0048: EX28DRAFT_0048 - Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily, at 25,760 to 26,314 _0048 Position (kb) 25 26Strain fitness (log2 ratio) -3 -2 -1 0 1at 24.731 kb on - strandat 24.817 kb on + strand, within EX28DRAFT_0046at 24.818 kb on - strand, within EX28DRAFT_0046at 24.850 kb on - strand, within EX28DRAFT_0046at 25.122 kb on - strand, within EX28DRAFT_0046at 25.341 kb on + strand, within EX28DRAFT_0046at 25.345 kb on + strand, within EX28DRAFT_0046at 25.346 kb on - strand, within EX28DRAFT_0046at 25.628 kb on + strand, within EX28DRAFT_0047at 25.628 kb on + strand, within EX28DRAFT_0047at 25.629 kb on - strand, within EX28DRAFT_0047at 25.690 kb on + strand, within EX28DRAFT_0047at 25.791 kb on + strandat 25.807 kb on + strandat 25.812 kb on + strandat 25.812 kb on + strandat 25.812 kb on + strandat 25.813 kb on - strandat 25.897 kb on - strand, within EX28DRAFT_0048at 25.897 kb on - strand, within EX28DRAFT_0048at 25.925 kb on + strand, within EX28DRAFT_0048at 25.950 kb on - strand, within EX28DRAFT_0048at 25.961 kb on + strand, within EX28DRAFT_0048at 25.961 kb on + strand, within EX28DRAFT_0048at 25.961 kb on + strand, within EX28DRAFT_0048at 25.962 kb on - strand, within EX28DRAFT_0048at 25.965 kb on - strand, within EX28DRAFT_0048at 25.965 kb on - strand, within EX28DRAFT_0048at 25.965 kb on - strand, within EX28DRAFT_0048at 25.965 kb on - strand, within EX28DRAFT_0048at 25.965 kb on - strand, within EX28DRAFT_0048at 26.094 kb on + strand, within EX28DRAFT_0048at 26.094 kb on + strand, within EX28DRAFT_0048at 26.137 kb on + strand, within EX28DRAFT_0048at 26.163 kb on + strand, within EX28DRAFT_0048at 26.163 kb on + strand, within EX28DRAFT_0048at 26.163 kb on + strand, within EX28DRAFT_0048at 26.164 kb on - strand, within EX28DRAFT_0048at 26.164 kb on - strand, within EX28DRAFT_0048at 26.167 kb on + strand, within EX28DRAFT_0048at 26.168 kb on - strand, within EX28DRAFT_0048at 26.290 kb on + strandat 26.290 kb on + strandat 26.292 kb on + strandat 26.292 kb on + strandat 26.292 kb on + strandat 26.300 kb on + strandat 26.300 kb on + strandat 26.300 kb on + strandat 26.301 kb on - strandat 26.301 kb on - strandat 26.314 kb on + strandat 26.314 kb on + strandat 26.314 kb on + strandat 26.314 kb on + strandat 26.315 kb on - strandat 26.315 kb on - strandat 26.318 kb on + strandat 26.318 kb on + strandat 26.318 kb on + strandat 26.318 kb on + strandat 26.319 kb on - strandat 26.319 kb on - strandat 26.357 kb on + strandat 26.361 kb on - strandat 26.391 kb on + strandat 26.396 kb on - strandat 26.489 kb on + strandat 26.489 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
remove
24,731 - -0.9
24,817 + EX28DRAFT_0046 0.12 -2.1
24,818 - EX28DRAFT_0046 0.12 -2.6
24,850 - EX28DRAFT_0046 0.16 -1.1
25,122 - EX28DRAFT_0046 0.49 -2.1
25,341 + EX28DRAFT_0046 0.76 -2.2
25,345 + EX28DRAFT_0046 0.76 -3.5
25,346 - EX28DRAFT_0046 0.76 -1.9
25,628 + EX28DRAFT_0047 0.37 -1.6
25,628 + EX28DRAFT_0047 0.37 -1.9
25,629 - EX28DRAFT_0047 0.37 -2.5
25,690 + EX28DRAFT_0047 0.62 -1.1
25,791 + +1.4
25,807 + -0.9
25,812 + +0.3
25,812 + -0.2
25,812 + -1.6
25,813 - +0.8
25,897 - EX28DRAFT_0048 0.25 +0.4
25,897 - EX28DRAFT_0048 0.25 +0.9
25,925 + EX28DRAFT_0048 0.30 -0.1
25,950 - EX28DRAFT_0048 0.34 -0.5
25,961 + EX28DRAFT_0048 0.36 +0.5
25,961 + EX28DRAFT_0048 0.36 +0.9
25,961 + EX28DRAFT_0048 0.36 +0.5
25,962 - EX28DRAFT_0048 0.36 +0.9
25,965 - EX28DRAFT_0048 0.37 -0.1
25,965 - EX28DRAFT_0048 0.37 +0.2
25,965 - EX28DRAFT_0048 0.37 +1.2
25,965 - EX28DRAFT_0048 0.37 -0.4
25,965 - EX28DRAFT_0048 0.37 +1.2
26,094 + EX28DRAFT_0048 0.60 -0.6
26,094 + EX28DRAFT_0048 0.60 +0.4
26,137 + EX28DRAFT_0048 0.68 -3.0
26,163 + EX28DRAFT_0048 0.73 -0.5
26,163 + EX28DRAFT_0048 0.73 +0.1
26,163 + EX28DRAFT_0048 0.73 -3.1
26,164 - EX28DRAFT_0048 0.73 +0.2
26,164 - EX28DRAFT_0048 0.73 -0.1
26,167 + EX28DRAFT_0048 0.73 -0.7
26,168 - EX28DRAFT_0048 0.74 -1.6
26,290 + -2.2
26,290 + +0.6
26,292 + -0.3
26,292 + +0.6
26,292 + +1.1
26,300 + +1.7
26,300 + +0.8
26,300 + +0.9
26,301 - +0.3
26,301 - -0.1
26,314 + +1.4
26,314 + +0.2
26,314 + +0.4
26,314 + +1.7
26,315 - +0.3
26,315 - +0.1
26,318 + +0.1
26,318 + -0.6
26,318 + -0.1
26,318 + -0.3
26,319 - -3.6
26,319 - +0.2
26,357 + +0.2
26,361 - -2.9
26,391 + +0.5
26,396 - +1.0
26,489 + +0.1
26,489 + -0.2

Or see this region's nucleotide sequence