Experiment: without_iron1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS21815 and AMB_RS21820 are separated by 254 nucleotides AMB_RS21820 and AMB_RS21825 are separated by 5 nucleotides AMB_RS21825 and AMB_RS21830 are separated by 106 nucleotides AMB_RS21830 and AMB_RS21835 are separated by 126 nucleotides
AMB_RS21815: AMB_RS21815 - esterase, at 4,718,275 to 4,718,949
_RS21815
AMB_RS21820: AMB_RS21820 - HNH endonuclease, at 4,719,204 to 4,719,719
_RS21820
AMB_RS21825: AMB_RS21825 - chitin deacetylase, at 4,719,725 to 4,720,729
_RS21825
AMB_RS21830: AMB_RS21830 - malonic semialdehyde reductase, at 4,720,836 to 4,721,426
_RS21830
AMB_RS21835: AMB_RS21835 - DUF4197 domain-containing protein, at 4,721,553 to 4,722,332
_RS21835
Position (kb) 4719
4720
4721 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4719.007 kb on + strand at 4719.008 kb on - strand at 4719.010 kb on + strand at 4719.012 kb on + strand at 4719.013 kb on - strand at 4719.013 kb on - strand at 4719.694 kb on - strand at 4719.717 kb on + strand at 4719.718 kb on - strand at 4720.039 kb on - strand, within AMB_RS21825 at 4720.039 kb on - strand, within AMB_RS21825 at 4720.443 kb on + strand, within AMB_RS21825 at 4720.443 kb on + strand, within AMB_RS21825 at 4720.443 kb on + strand, within AMB_RS21825 at 4720.443 kb on + strand, within AMB_RS21825 at 4720.443 kb on + strand, within AMB_RS21825 at 4720.443 kb on + strand, within AMB_RS21825 at 4720.443 kb on + strand, within AMB_RS21825 at 4720.444 kb on - strand, within AMB_RS21825 at 4720.444 kb on - strand, within AMB_RS21825 at 4720.444 kb on - strand, within AMB_RS21825 at 4720.444 kb on - strand, within AMB_RS21825 at 4720.638 kb on + strand at 4720.638 kb on + strand at 4720.639 kb on - strand at 4720.639 kb on - strand at 4720.781 kb on + strand at 4720.781 kb on + strand at 4720.781 kb on + strand at 4720.782 kb on - strand at 4720.835 kb on + strand at 4720.844 kb on + strand at 4720.845 kb on - strand at 4720.845 kb on - strand at 4721.115 kb on + strand, within AMB_RS21830 at 4721.115 kb on + strand, within AMB_RS21830 at 4721.115 kb on + strand, within AMB_RS21830 at 4721.226 kb on + strand, within AMB_RS21830 at 4721.226 kb on + strand, within AMB_RS21830 at 4721.226 kb on + strand, within AMB_RS21830 at 4721.226 kb on + strand, within AMB_RS21830 at 4721.227 kb on - strand, within AMB_RS21830 at 4721.227 kb on - strand, within AMB_RS21830 at 4721.355 kb on + strand, within AMB_RS21830 at 4721.355 kb on + strand, within AMB_RS21830 at 4721.356 kb on - strand, within AMB_RS21830 at 4721.356 kb on - strand, within AMB_RS21830 at 4721.424 kb on + strand at 4721.424 kb on + strand at 4721.425 kb on - strand at 4721.565 kb on + strand at 4721.566 kb on - strand at 4721.635 kb on + strand, within AMB_RS21835 at 4721.636 kb on - strand, within AMB_RS21835 at 4721.659 kb on + strand, within AMB_RS21835 at 4721.659 kb on + strand, within AMB_RS21835 at 4721.660 kb on - strand, within AMB_RS21835
Per-strain Table
Position Strand Gene LocusTag Fraction without_iron1 remove 4,719,007 + +0.2 4,719,008 - -0.5 4,719,010 + -0.2 4,719,012 + +0.3 4,719,013 - -0.2 4,719,013 - -0.1 4,719,694 - +0.1 4,719,717 + -0.4 4,719,718 - +0.0 4,720,039 - AMB_RS21825 0.31 -2.3 4,720,039 - AMB_RS21825 0.31 -1.5 4,720,443 + AMB_RS21825 0.71 +0.7 4,720,443 + AMB_RS21825 0.71 -1.9 4,720,443 + AMB_RS21825 0.71 -0.4 4,720,443 + AMB_RS21825 0.71 -1.3 4,720,443 + AMB_RS21825 0.71 -0.3 4,720,443 + AMB_RS21825 0.71 +0.0 4,720,443 + AMB_RS21825 0.71 +0.6 4,720,444 - AMB_RS21825 0.72 -1.7 4,720,444 - AMB_RS21825 0.72 +0.2 4,720,444 - AMB_RS21825 0.72 +0.2 4,720,444 - AMB_RS21825 0.72 -2.7 4,720,638 + -0.2 4,720,638 + +0.3 4,720,639 - -0.7 4,720,639 - -0.5 4,720,781 + -1.5 4,720,781 + -0.2 4,720,781 + +0.6 4,720,782 - -0.8 4,720,835 + +1.2 4,720,844 + -0.6 4,720,845 - +0.5 4,720,845 - -0.3 4,721,115 + AMB_RS21830 0.47 -1.0 4,721,115 + AMB_RS21830 0.47 +0.7 4,721,115 + AMB_RS21830 0.47 -0.2 4,721,226 + AMB_RS21830 0.66 +0.3 4,721,226 + AMB_RS21830 0.66 +2.3 4,721,226 + AMB_RS21830 0.66 -0.0 4,721,226 + AMB_RS21830 0.66 -0.7 4,721,227 - AMB_RS21830 0.66 +1.5 4,721,227 - AMB_RS21830 0.66 -0.3 4,721,355 + AMB_RS21830 0.88 -1.4 4,721,355 + AMB_RS21830 0.88 -0.3 4,721,356 - AMB_RS21830 0.88 -0.0 4,721,356 - AMB_RS21830 0.88 -0.5 4,721,424 + +0.1 4,721,424 + -1.2 4,721,425 - +0.3 4,721,565 + -1.8 4,721,566 - -0.2 4,721,635 + AMB_RS21835 0.11 +0.3 4,721,636 - AMB_RS21835 0.11 -0.5 4,721,659 + AMB_RS21835 0.14 -0.9 4,721,659 + AMB_RS21835 0.14 +0.3 4,721,660 - AMB_RS21835 0.14 +0.0
Or see this region's nucleotide sequence