Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS20060

Experiment: without_iron1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS20050 and AMB_RS20055 are separated by 319 nucleotidesAMB_RS20055 and AMB_RS20060 overlap by 17 nucleotidesAMB_RS20060 and AMB_RS20065 are separated by 0 nucleotidesAMB_RS20065 and AMB_RS20070 are separated by 179 nucleotides AMB_RS20050: AMB_RS20050 - dihydrolipoyl dehydrogenase, at 4,373,380 to 4,374,789 _RS20050 AMB_RS20055: AMB_RS20055 - MerR family transcriptional regulator, at 4,375,109 to 4,375,480 _RS20055 AMB_RS20060: AMB_RS20060 - 4-carboxymuconolactone decarboxylase, at 4,375,464 to 4,375,865 _RS20060 AMB_RS20065: AMB_RS20065 - hemerythrin, at 4,375,866 to 4,376,312 _RS20065 AMB_RS20070: AMB_RS20070 - MFS transporter, at 4,376,492 to 4,377,622 _RS20070 Position (kb) 4375 4376Strain fitness (log2 ratio) -2 -1 0 1 2at 4374.906 kb on + strandat 4374.907 kb on - strandat 4375.053 kb on + strandat 4375.084 kb on - strandat 4375.084 kb on - strandat 4375.166 kb on + strand, within AMB_RS20055at 4375.167 kb on - strand, within AMB_RS20055at 4375.223 kb on + strand, within AMB_RS20055at 4375.224 kb on - strand, within AMB_RS20055at 4375.304 kb on + strand, within AMB_RS20055at 4375.305 kb on - strand, within AMB_RS20055at 4375.305 kb on - strand, within AMB_RS20055at 4375.442 kb on + strand, within AMB_RS20055at 4375.443 kb on - strandat 4375.443 kb on - strandat 4375.584 kb on + strand, within AMB_RS20060at 4375.584 kb on + strand, within AMB_RS20060at 4375.585 kb on - strand, within AMB_RS20060at 4375.610 kb on + strand, within AMB_RS20060at 4375.610 kb on + strand, within AMB_RS20060at 4375.614 kb on + strand, within AMB_RS20060at 4375.614 kb on + strand, within AMB_RS20060at 4375.614 kb on + strand, within AMB_RS20060at 4375.614 kb on + strand, within AMB_RS20060at 4375.614 kb on + strand, within AMB_RS20060at 4375.614 kb on + strand, within AMB_RS20060at 4375.614 kb on + strand, within AMB_RS20060at 4375.614 kb on + strand, within AMB_RS20060at 4375.615 kb on - strand, within AMB_RS20060at 4375.615 kb on - strand, within AMB_RS20060at 4375.615 kb on - strand, within AMB_RS20060at 4375.615 kb on - strand, within AMB_RS20060at 4375.615 kb on - strand, within AMB_RS20060at 4375.615 kb on - strand, within AMB_RS20060at 4375.724 kb on + strand, within AMB_RS20060at 4375.724 kb on + strand, within AMB_RS20060at 4375.779 kb on + strand, within AMB_RS20060at 4375.779 kb on + strand, within AMB_RS20060at 4375.779 kb on + strand, within AMB_RS20060at 4375.780 kb on - strand, within AMB_RS20060at 4375.780 kb on - strand, within AMB_RS20060at 4375.925 kb on - strand, within AMB_RS20065at 4375.925 kb on - strand, within AMB_RS20065at 4376.041 kb on + strand, within AMB_RS20065at 4376.041 kb on + strand, within AMB_RS20065at 4376.042 kb on - strand, within AMB_RS20065at 4376.053 kb on + strand, within AMB_RS20065at 4376.053 kb on + strand, within AMB_RS20065at 4376.053 kb on + strand, within AMB_RS20065at 4376.312 kb on + strandat 4376.312 kb on + strandat 4376.313 kb on - strandat 4376.313 kb on - strandat 4376.322 kb on - strandat 4376.322 kb on - strandat 4376.364 kb on + strandat 4376.364 kb on + strandat 4376.364 kb on + strandat 4376.364 kb on + strandat 4376.365 kb on - strandat 4376.365 kb on - strandat 4376.376 kb on - strandat 4376.377 kb on + strandat 4376.377 kb on + strandat 4376.378 kb on - strandat 4376.378 kb on - strandat 4376.398 kb on + strandat 4376.598 kb on - strandat 4376.598 kb on - strandat 4376.599 kb on + strandat 4376.600 kb on - strandat 4376.600 kb on - strandat 4376.600 kb on - strandat 4376.658 kb on - strand, within AMB_RS20070at 4376.699 kb on + strand, within AMB_RS20070at 4376.699 kb on + strand, within AMB_RS20070at 4376.700 kb on - strand, within AMB_RS20070at 4376.700 kb on - strand, within AMB_RS20070at 4376.774 kb on + strand, within AMB_RS20070at 4376.774 kb on + strand, within AMB_RS20070at 4376.774 kb on + strand, within AMB_RS20070at 4376.774 kb on + strand, within AMB_RS20070at 4376.774 kb on + strand, within AMB_RS20070at 4376.774 kb on + strand, within AMB_RS20070at 4376.774 kb on + strand, within AMB_RS20070at 4376.774 kb on + strand, within AMB_RS20070at 4376.774 kb on + strand, within AMB_RS20070at 4376.774 kb on + strand, within AMB_RS20070at 4376.774 kb on + strand, within AMB_RS20070at 4376.774 kb on + strand, within AMB_RS20070at 4376.775 kb on + strand, within AMB_RS20070at 4376.775 kb on - strand, within AMB_RS20070at 4376.775 kb on - strand, within AMB_RS20070at 4376.775 kb on - strand, within AMB_RS20070at 4376.775 kb on - strand, within AMB_RS20070at 4376.775 kb on - strand, within AMB_RS20070at 4376.775 kb on - strand, within AMB_RS20070at 4376.775 kb on - strand, within AMB_RS20070at 4376.775 kb on - strand, within AMB_RS20070at 4376.776 kb on + strand, within AMB_RS20070at 4376.776 kb on + strand, within AMB_RS20070at 4376.777 kb on - strand, within AMB_RS20070at 4376.777 kb on - strand, within AMB_RS20070at 4376.777 kb on - strand, within AMB_RS20070at 4376.777 kb on - strand, within AMB_RS20070at 4376.777 kb on - strand, within AMB_RS20070at 4376.843 kb on + strand, within AMB_RS20070at 4376.843 kb on + strand, within AMB_RS20070at 4376.844 kb on - strand, within AMB_RS20070

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Per-strain Table

Position Strand Gene LocusTag Fraction without_iron1
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4,374,906 + -1.0
4,374,907 - +0.2
4,375,053 + -0.3
4,375,084 - -0.1
4,375,084 - +0.7
4,375,166 + AMB_RS20055 0.15 -0.7
4,375,167 - AMB_RS20055 0.16 -0.8
4,375,223 + AMB_RS20055 0.31 -1.1
4,375,224 - AMB_RS20055 0.31 -2.4
4,375,304 + AMB_RS20055 0.52 -1.4
4,375,305 - AMB_RS20055 0.53 -0.3
4,375,305 - AMB_RS20055 0.53 +0.0
4,375,442 + AMB_RS20055 0.90 -0.1
4,375,443 - -0.0
4,375,443 - -0.4
4,375,584 + AMB_RS20060 0.30 -0.7
4,375,584 + AMB_RS20060 0.30 +0.2
4,375,585 - AMB_RS20060 0.30 +0.3
4,375,610 + AMB_RS20060 0.36 -0.6
4,375,610 + AMB_RS20060 0.36 -0.0
4,375,614 + AMB_RS20060 0.37 -0.7
4,375,614 + AMB_RS20060 0.37 -0.1
4,375,614 + AMB_RS20060 0.37 -0.7
4,375,614 + AMB_RS20060 0.37 +0.2
4,375,614 + AMB_RS20060 0.37 -0.1
4,375,614 + AMB_RS20060 0.37 +0.3
4,375,614 + AMB_RS20060 0.37 -0.3
4,375,614 + AMB_RS20060 0.37 -0.2
4,375,615 - AMB_RS20060 0.38 -0.6
4,375,615 - AMB_RS20060 0.38 -0.6
4,375,615 - AMB_RS20060 0.38 +0.3
4,375,615 - AMB_RS20060 0.38 -0.7
4,375,615 - AMB_RS20060 0.38 -0.5
4,375,615 - AMB_RS20060 0.38 +2.3
4,375,724 + AMB_RS20060 0.65 +0.4
4,375,724 + AMB_RS20060 0.65 -0.1
4,375,779 + AMB_RS20060 0.78 -0.9
4,375,779 + AMB_RS20060 0.78 -0.5
4,375,779 + AMB_RS20060 0.78 +1.3
4,375,780 - AMB_RS20060 0.79 +0.1
4,375,780 - AMB_RS20060 0.79 +0.3
4,375,925 - AMB_RS20065 0.13 +0.8
4,375,925 - AMB_RS20065 0.13 +0.5
4,376,041 + AMB_RS20065 0.39 -0.1
4,376,041 + AMB_RS20065 0.39 -0.9
4,376,042 - AMB_RS20065 0.39 +0.7
4,376,053 + AMB_RS20065 0.42 +0.1
4,376,053 + AMB_RS20065 0.42 -0.1
4,376,053 + AMB_RS20065 0.42 +0.3
4,376,312 + +0.3
4,376,312 + -0.6
4,376,313 - -0.2
4,376,313 - -0.2
4,376,322 - -0.1
4,376,322 - -0.2
4,376,364 + -0.4
4,376,364 + -0.1
4,376,364 + +0.3
4,376,364 + -0.0
4,376,365 - +0.1
4,376,365 - +0.4
4,376,376 - +0.3
4,376,377 + +0.1
4,376,377 + -1.7
4,376,378 - +0.3
4,376,378 - -0.4
4,376,398 + +1.0
4,376,598 - -0.7
4,376,598 - +0.3
4,376,599 + -0.0
4,376,600 - -0.4
4,376,600 - -0.5
4,376,600 - -0.9
4,376,658 - AMB_RS20070 0.15 +0.8
4,376,699 + AMB_RS20070 0.18 -0.2
4,376,699 + AMB_RS20070 0.18 +0.0
4,376,700 - AMB_RS20070 0.18 -0.3
4,376,700 - AMB_RS20070 0.18 +0.4
4,376,774 + AMB_RS20070 0.25 -0.2
4,376,774 + AMB_RS20070 0.25 -0.9
4,376,774 + AMB_RS20070 0.25 +0.3
4,376,774 + AMB_RS20070 0.25 -0.6
4,376,774 + AMB_RS20070 0.25 -0.0
4,376,774 + AMB_RS20070 0.25 +0.6
4,376,774 + AMB_RS20070 0.25 +0.3
4,376,774 + AMB_RS20070 0.25 -0.5
4,376,774 + AMB_RS20070 0.25 +1.8
4,376,774 + AMB_RS20070 0.25 +1.3
4,376,774 + AMB_RS20070 0.25 -0.9
4,376,774 + AMB_RS20070 0.25 +0.6
4,376,775 + AMB_RS20070 0.25 -0.7
4,376,775 - AMB_RS20070 0.25 -0.6
4,376,775 - AMB_RS20070 0.25 -0.1
4,376,775 - AMB_RS20070 0.25 -0.2
4,376,775 - AMB_RS20070 0.25 -0.2
4,376,775 - AMB_RS20070 0.25 -0.6
4,376,775 - AMB_RS20070 0.25 -0.7
4,376,775 - AMB_RS20070 0.25 -0.7
4,376,775 - AMB_RS20070 0.25 +0.2
4,376,776 + AMB_RS20070 0.25 +0.3
4,376,776 + AMB_RS20070 0.25 -0.4
4,376,777 - AMB_RS20070 0.25 +0.5
4,376,777 - AMB_RS20070 0.25 +0.1
4,376,777 - AMB_RS20070 0.25 -0.3
4,376,777 - AMB_RS20070 0.25 -0.3
4,376,777 - AMB_RS20070 0.25 +0.6
4,376,843 + AMB_RS20070 0.31 -1.1
4,376,843 + AMB_RS20070 0.31 +0.6
4,376,844 - AMB_RS20070 0.31 -0.6

Or see this region's nucleotide sequence