Experiment: without_iron1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS19395 and AMB_RS19400 are separated by 73 nucleotides AMB_RS19400 and AMB_RS19405 are separated by 54 nucleotides AMB_RS19405 and AMB_RS19410 are separated by 169 nucleotides
AMB_RS19395: AMB_RS19395 - dehydrogenase, at 4,231,921 to 4,232,589
_RS19395
AMB_RS19400: AMB_RS19400 - RidA family protein, at 4,232,663 to 4,233,037
_RS19400
AMB_RS19405: AMB_RS19405 - DUF1491 domain-containing protein, at 4,233,092 to 4,233,436
_RS19405
AMB_RS19410: AMB_RS19410 - Kef-type K+ transporter NAD-binding protein, at 4,233,606 to 4,234,790
_RS19410
Position (kb) 4233
4234 Strain fitness (log2 ratio) -2
-1
0
1 at 4232.159 kb on + strand, within AMB_RS19395 at 4232.166 kb on - strand, within AMB_RS19395 at 4232.166 kb on - strand, within AMB_RS19395 at 4232.166 kb on - strand, within AMB_RS19395 at 4232.348 kb on + strand, within AMB_RS19395 at 4232.348 kb on + strand, within AMB_RS19395 at 4232.348 kb on + strand, within AMB_RS19395 at 4232.349 kb on - strand, within AMB_RS19395 at 4232.444 kb on + strand, within AMB_RS19395 at 4232.444 kb on + strand, within AMB_RS19395 at 4232.444 kb on + strand, within AMB_RS19395 at 4232.444 kb on + strand, within AMB_RS19395 at 4232.444 kb on + strand, within AMB_RS19395 at 4232.445 kb on - strand, within AMB_RS19395 at 4232.445 kb on - strand, within AMB_RS19395 at 4232.445 kb on - strand, within AMB_RS19395 at 4232.528 kb on + strand at 4232.529 kb on - strand at 4232.529 kb on - strand at 4232.665 kb on - strand at 4232.811 kb on + strand, within AMB_RS19400 at 4232.811 kb on + strand, within AMB_RS19400 at 4232.811 kb on + strand, within AMB_RS19400 at 4232.811 kb on + strand, within AMB_RS19400 at 4232.811 kb on + strand, within AMB_RS19400 at 4232.811 kb on + strand, within AMB_RS19400 at 4232.811 kb on + strand, within AMB_RS19400 at 4232.811 kb on + strand, within AMB_RS19400 at 4232.811 kb on + strand, within AMB_RS19400 at 4232.811 kb on + strand, within AMB_RS19400 at 4232.811 kb on + strand, within AMB_RS19400 at 4232.811 kb on + strand, within AMB_RS19400 at 4232.812 kb on - strand, within AMB_RS19400 at 4232.812 kb on - strand, within AMB_RS19400 at 4232.812 kb on - strand, within AMB_RS19400 at 4232.812 kb on - strand, within AMB_RS19400 at 4232.985 kb on + strand, within AMB_RS19400 at 4233.049 kb on + strand at 4233.050 kb on - strand at 4233.050 kb on - strand at 4233.050 kb on - strand at 4233.078 kb on + strand at 4233.078 kb on + strand at 4233.079 kb on - strand at 4233.079 kb on - strand at 4233.079 kb on - strand at 4233.083 kb on + strand at 4233.083 kb on + strand at 4233.083 kb on + strand at 4233.083 kb on + strand at 4233.084 kb on - strand at 4233.084 kb on - strand at 4233.191 kb on - strand, within AMB_RS19405 at 4233.192 kb on + strand, within AMB_RS19405 at 4233.192 kb on + strand, within AMB_RS19405 at 4233.193 kb on - strand, within AMB_RS19405 at 4233.193 kb on - strand, within AMB_RS19405 at 4233.731 kb on + strand, within AMB_RS19410 at 4233.731 kb on + strand, within AMB_RS19410 at 4233.731 kb on + strand, within AMB_RS19410 at 4233.901 kb on + strand, within AMB_RS19410 at 4233.901 kb on + strand, within AMB_RS19410 at 4233.901 kb on + strand, within AMB_RS19410 at 4233.901 kb on + strand, within AMB_RS19410 at 4233.901 kb on + strand, within AMB_RS19410 at 4233.901 kb on + strand, within AMB_RS19410 at 4233.901 kb on + strand, within AMB_RS19410 at 4233.901 kb on + strand, within AMB_RS19410 at 4233.901 kb on + strand, within AMB_RS19410 at 4233.902 kb on - strand, within AMB_RS19410 at 4233.902 kb on - strand, within AMB_RS19410 at 4233.902 kb on - strand, within AMB_RS19410 at 4234.020 kb on + strand, within AMB_RS19410 at 4234.021 kb on - strand, within AMB_RS19410 at 4234.021 kb on - strand, within AMB_RS19410 at 4234.273 kb on + strand, within AMB_RS19410 at 4234.273 kb on + strand, within AMB_RS19410 at 4234.273 kb on + strand, within AMB_RS19410 at 4234.273 kb on + strand, within AMB_RS19410 at 4234.274 kb on - strand, within AMB_RS19410 at 4234.274 kb on - strand, within AMB_RS19410 at 4234.274 kb on - strand, within AMB_RS19410 at 4234.274 kb on - strand, within AMB_RS19410 at 4234.274 kb on - strand, within AMB_RS19410 at 4234.274 kb on - strand, within AMB_RS19410 at 4234.385 kb on - strand, within AMB_RS19410
Per-strain Table
Position Strand Gene LocusTag Fraction without_iron1 remove 4,232,159 + AMB_RS19395 0.36 -0.2 4,232,166 - AMB_RS19395 0.37 +0.4 4,232,166 - AMB_RS19395 0.37 -0.4 4,232,166 - AMB_RS19395 0.37 -1.0 4,232,348 + AMB_RS19395 0.64 +0.8 4,232,348 + AMB_RS19395 0.64 +0.0 4,232,348 + AMB_RS19395 0.64 -1.2 4,232,349 - AMB_RS19395 0.64 +0.1 4,232,444 + AMB_RS19395 0.78 -0.5 4,232,444 + AMB_RS19395 0.78 +0.1 4,232,444 + AMB_RS19395 0.78 -0.3 4,232,444 + AMB_RS19395 0.78 -0.8 4,232,444 + AMB_RS19395 0.78 +0.5 4,232,445 - AMB_RS19395 0.78 +0.5 4,232,445 - AMB_RS19395 0.78 -0.2 4,232,445 - AMB_RS19395 0.78 +0.7 4,232,528 + +0.7 4,232,529 - -0.5 4,232,529 - -0.6 4,232,665 - +0.6 4,232,811 + AMB_RS19400 0.39 +1.0 4,232,811 + AMB_RS19400 0.39 -0.4 4,232,811 + AMB_RS19400 0.39 +0.3 4,232,811 + AMB_RS19400 0.39 +0.5 4,232,811 + AMB_RS19400 0.39 +0.9 4,232,811 + AMB_RS19400 0.39 -0.2 4,232,811 + AMB_RS19400 0.39 -0.7 4,232,811 + AMB_RS19400 0.39 -1.0 4,232,811 + AMB_RS19400 0.39 -0.8 4,232,811 + AMB_RS19400 0.39 +0.1 4,232,811 + AMB_RS19400 0.39 -0.3 4,232,811 + AMB_RS19400 0.39 -0.1 4,232,812 - AMB_RS19400 0.40 -1.3 4,232,812 - AMB_RS19400 0.40 +0.2 4,232,812 - AMB_RS19400 0.40 -0.6 4,232,812 - AMB_RS19400 0.40 -1.1 4,232,985 + AMB_RS19400 0.86 -0.3 4,233,049 + -0.3 4,233,050 - -1.0 4,233,050 - -0.3 4,233,050 - -0.2 4,233,078 + -1.0 4,233,078 + +0.2 4,233,079 - +0.4 4,233,079 - -0.2 4,233,079 - -0.1 4,233,083 + -0.5 4,233,083 + -1.3 4,233,083 + -0.7 4,233,083 + -0.1 4,233,084 - -0.5 4,233,084 - -1.0 4,233,191 - AMB_RS19405 0.29 -1.6 4,233,192 + AMB_RS19405 0.29 -0.1 4,233,192 + AMB_RS19405 0.29 -1.1 4,233,193 - AMB_RS19405 0.29 -0.6 4,233,193 - AMB_RS19405 0.29 +0.3 4,233,731 + AMB_RS19410 0.11 +0.2 4,233,731 + AMB_RS19410 0.11 +0.3 4,233,731 + AMB_RS19410 0.11 -0.1 4,233,901 + AMB_RS19410 0.25 -0.8 4,233,901 + AMB_RS19410 0.25 -0.4 4,233,901 + AMB_RS19410 0.25 -1.2 4,233,901 + AMB_RS19410 0.25 +0.4 4,233,901 + AMB_RS19410 0.25 -0.3 4,233,901 + AMB_RS19410 0.25 -0.5 4,233,901 + AMB_RS19410 0.25 -0.7 4,233,901 + AMB_RS19410 0.25 +0.6 4,233,901 + AMB_RS19410 0.25 -0.2 4,233,902 - AMB_RS19410 0.25 +0.2 4,233,902 - AMB_RS19410 0.25 -1.8 4,233,902 - AMB_RS19410 0.25 +0.4 4,234,020 + AMB_RS19410 0.35 -0.1 4,234,021 - AMB_RS19410 0.35 -0.7 4,234,021 - AMB_RS19410 0.35 +0.0 4,234,273 + AMB_RS19410 0.56 -0.2 4,234,273 + AMB_RS19410 0.56 -0.5 4,234,273 + AMB_RS19410 0.56 +0.4 4,234,273 + AMB_RS19410 0.56 -0.7 4,234,274 - AMB_RS19410 0.56 -0.6 4,234,274 - AMB_RS19410 0.56 +0.1 4,234,274 - AMB_RS19410 0.56 -0.2 4,234,274 - AMB_RS19410 0.56 -0.2 4,234,274 - AMB_RS19410 0.56 -0.6 4,234,274 - AMB_RS19410 0.56 -0.5 4,234,385 - AMB_RS19410 0.66 -0.2
Or see this region's nucleotide sequence