Experiment: without_iron1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS16150 and AMB_RS16155 overlap by 4 nucleotides AMB_RS16155 and AMB_RS16160 are separated by 121 nucleotides AMB_RS16160 and AMB_RS16165 are separated by 46 nucleotides
AMB_RS16150: AMB_RS16150 - PhzF family phenazine biosynthesis protein, at 3,465,301 to 3,466,089
_RS16150
AMB_RS16155: AMB_RS16155 - bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase, at 3,466,086 to 3,466,892
_RS16155
AMB_RS16160: AMB_RS16160 - hypothetical protein, at 3,467,014 to 3,467,274
_RS16160
AMB_RS16165: AMB_RS16165 - phosphoglucosamine mutase, at 3,467,321 to 3,468,676
_RS16165
Position (kb)
3467
3468 Strain fitness (log2 ratio)
-1
0
1 at 3466.957 kb on - strand at 3466.992 kb on - strand at 3466.996 kb on + strand at 3466.996 kb on + strand at 3467.026 kb on - strand at 3467.035 kb on + strand at 3467.036 kb on - strand at 3467.038 kb on - strand at 3467.062 kb on - strand, within AMB_RS16160 at 3467.090 kb on - strand, within AMB_RS16160 at 3467.090 kb on - strand, within AMB_RS16160 at 3467.315 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction without_iron1 remove 3,466,957 - -0.0 3,466,992 - -0.1 3,466,996 + -0.2 3,466,996 + -1.7 3,467,026 - -0.2 3,467,035 + -0.6 3,467,036 - -0.1 3,467,038 - -0.6 3,467,062 - AMB_RS16160 0.18 +0.2 3,467,090 - AMB_RS16160 0.29 -0.3 3,467,090 - AMB_RS16160 0.29 +0.4 3,467,315 - -0.3
Or see this region's nucleotide sequence