Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS16160

Experiment: without_iron1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS16150 and AMB_RS16155 overlap by 4 nucleotidesAMB_RS16155 and AMB_RS16160 are separated by 121 nucleotidesAMB_RS16160 and AMB_RS16165 are separated by 46 nucleotides AMB_RS16150: AMB_RS16150 - PhzF family phenazine biosynthesis protein, at 3,465,301 to 3,466,089 _RS16150 AMB_RS16155: AMB_RS16155 - bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase, at 3,466,086 to 3,466,892 _RS16155 AMB_RS16160: AMB_RS16160 - hypothetical protein, at 3,467,014 to 3,467,274 _RS16160 AMB_RS16165: AMB_RS16165 - phosphoglucosamine mutase, at 3,467,321 to 3,468,676 _RS16165 Position (kb) 3467 3468Strain fitness (log2 ratio) -1 0 1at 3466.957 kb on - strandat 3466.992 kb on - strandat 3466.996 kb on + strandat 3466.996 kb on + strandat 3467.026 kb on - strandat 3467.035 kb on + strandat 3467.036 kb on - strandat 3467.038 kb on - strandat 3467.062 kb on - strand, within AMB_RS16160at 3467.090 kb on - strand, within AMB_RS16160at 3467.090 kb on - strand, within AMB_RS16160at 3467.315 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction without_iron1
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3,466,957 - -0.0
3,466,992 - -0.1
3,466,996 + -0.2
3,466,996 + -1.7
3,467,026 - -0.2
3,467,035 + -0.6
3,467,036 - -0.1
3,467,038 - -0.6
3,467,062 - AMB_RS16160 0.18 +0.2
3,467,090 - AMB_RS16160 0.29 -0.3
3,467,090 - AMB_RS16160 0.29 +0.4
3,467,315 - -0.3

Or see this region's nucleotide sequence