Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS10605

Experiment: without_iron1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS10590 and AMB_RS10600 are separated by 1 nucleotidesAMB_RS10600 and AMB_RS10605 are separated by 109 nucleotidesAMB_RS10605 and AMB_RS10610 overlap by 1 nucleotidesAMB_RS10610 and AMB_RS10615 are separated by 155 nucleotides AMB_RS10590: AMB_RS10590 - 50S ribosomal protein L9, at 2,274,409 to 2,274,972 _RS10590 AMB_RS10600: AMB_RS10600 - hypothetical protein, at 2,274,974 to 2,275,839 _RS10600 AMB_RS10605: AMB_RS10605 - 30S ribosomal protein S18, at 2,275,949 to 2,276,227 _RS10605 AMB_RS10610: AMB_RS10610 - 30S ribosomal protein S6, at 2,276,227 to 2,276,661 _RS10610 AMB_RS10615: AMB_RS10615 - HAMP domain-containing protein, at 2,276,817 to 2,278,982 _RS10615 Position (kb) 2275 2276 2277Strain fitness (log2 ratio) -1 0 1at 2274.976 kb on - strandat 2274.976 kb on - strandat 2275.092 kb on + strand, within AMB_RS10600at 2275.093 kb on - strand, within AMB_RS10600at 2275.093 kb on - strand, within AMB_RS10600at 2275.093 kb on - strand, within AMB_RS10600at 2275.093 kb on - strand, within AMB_RS10600at 2275.107 kb on + strand, within AMB_RS10600at 2275.210 kb on - strand, within AMB_RS10600at 2275.210 kb on - strand, within AMB_RS10600at 2276.720 kb on - strandat 2276.720 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction without_iron1
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2,274,976 - -0.7
2,274,976 - -0.6
2,275,092 + AMB_RS10600 0.14 +1.5
2,275,093 - AMB_RS10600 0.14 -1.6
2,275,093 - AMB_RS10600 0.14 +0.3
2,275,093 - AMB_RS10600 0.14 -0.0
2,275,093 - AMB_RS10600 0.14 +0.6
2,275,107 + AMB_RS10600 0.15 +0.1
2,275,210 - AMB_RS10600 0.27 -0.2
2,275,210 - AMB_RS10600 0.27 -0.2
2,276,720 - -0.8
2,276,720 - -0.5

Or see this region's nucleotide sequence